C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003LN_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000068781-ENSG00000068781 CGP 9606 2:48529925-48776517
GeneTranscriptPositionBiotype
ENSG00000138039 (LHCGR)
luteinizing hormone/choriogonadotropin receptor 		ENST00000294954 (LHCGR-001) 48686775-48755693 protein_coding
ENST00000401907 (LHCGR-006) 48687669-48755730 protein_coding
ENST00000403273 (LHCGR-004) 48687669-48755730 protein_coding
ENST00000405626 (LHCGR-003) 48687643-48755671 protein_coding
ENST00000428232 (LHCGR-007) 48720040-48755569 protein_coding
ENST00000477576 (LHCGR-008) 48708770-48723514 processed_transcript
ENSG00000242441 (GTF2A1L)
general transcription factor IIA, 1-like 		ENST00000403751 (GTF2A1L-001) 48617838-48679607 protein_coding
ENST00000423675 (GTF2A1L-003) 48617848-48646598 nonsense_mediated_decay
ENST00000430487 (GTF2A1L-201) 48617798-48679605 protein_coding
ENST00000437125 (GTF2A1L-006) 48617798-48647042 protein_coding
ENST00000448460 (GTF2A1L-004) 48617798-48646660 protein_coding
ENST00000468326 (GTF2A1L-002) 48617856-48646553 processed_transcript
ENST00000508440 (GTF2A1L-007) 48669797-48733148 protein_coding
ENSG00000243244 (STON1)
stonin 1 		ENST00000404752 (STON1-002) 48530171-48598512 protein_coding
ENST00000406226 (STON1-001) 48530186-48598513 protein_coding
ENST00000444932 (STON1-003) 48582296-48595854 nonsense_mediated_decay
ENST00000484110 (STON1-004) 48529383-48531917 retained_intron

Homo sapiens Ensembl (GRCh38)

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Structures from Ensembl
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CIL_0003LN_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000033855-ENSMUSG00000024154 CGP 10090 17:88597684-88715152
GeneTranscriptPositionBiotype
ENSMUSG00000024154 (Gtf2a1l)
general transcription factor IIA, 1-like 		ENSMUST00000024970 (Gtf2a1l-001) 88668660-88715152 protein_coding
ENSMUST00000161481 (Gtf2a1l-002) 88668696-88694586 protein_coding
ENSMUSG00000033855 (Ston1)
stonin 1 		ENSMUST00000064035 (Ston1-001) 88626555-88648696 protein_coding
ENSMUST00000112216 (Ston1-004) 88627364-88637634 retained_intron
ENSMUST00000132384 (Ston1-003) 88626833-88637535 retained_intron
ENSMUST00000137138 (Ston1-005) 88597684-88635829 protein_coding
ENSMUST00000150023 (Ston1-002) 88626609-88662586 protein_coding
ENSMUST00000153613 (Ston1-006) 88597696-88645322 processed_transcript
ENSMUST00000163588 (Ston1-201) 88626555-88645724 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003LN_0001ENSG00000138039ENST00000294954ENST00000401907ENST00000403273ENST00000405626ENST00000428232ENST00000477576ENSG00000242441ENST00000403751ENST00000423675ENST00000430487ENST00000437125ENST00000448460ENST00000468326ENST00000508440ENSG00000243244ENST00000404752ENST00000406226ENST00000444932ENST00000484110CIL_0003LN_0002ENSMUSG00000024154ENSMUST00000024970ENSMUST00000161481ENSMUSG00000033855ENSMUST00000064035ENSMUST00000112216ENSMUST00000132384ENSMUST00000137138ENSMUST00000150023ENSMUST00000153613ENSMUST00000163588
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003LN_0001ENSG00000138039ENST00000294954ENSG00000242441ENST00000403751ENST00000430487ENSG00000243244ENST00000404752ENST00000406226ENST00000444932CIL_0003LN_0002ENSMUSG00000024154ENSMUST00000024970ENSMUST00000161481ENSMUSG00000033855ENSMUST00000064035ENSMUST00000112216ENSMUST00000132384ENSMUST00000137138ENSMUST00000150023ENSMUST00000163588
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000138039 ENST00000294954 N/A N/A N/A N/A 1.855±0.00 N/A N/A N/A N/A N/A N/A 5.660±0.00 N/A N/A
ENST00000401907 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000403273 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000405626 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000428232 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477576 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000242441 ENST00000403751 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 20.646±10.28
ENST00000423675 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000430487 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 27.232±0.00
ENST00000437125 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000448460 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468326 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000508440 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000243244 ENST00000404752 6.004±0.00 2.924±0.00 1.441±0.00 0.185±0.11 2.598±0.15 1.473±0.34 0.521±0.30 1.316±0.90 7.667±0.00 1.788±0.00 0.456±0.26 3.509±1.29 2.469±1.01 5.330±0.00
ENST00000406226 0.936±0.00 N/A N/A 0.311±0.00 0.691±0.00 4.383±0.00 0.745±0.00 2.214±0.00 3.736±3.65 3.611±0.00 N/A 0.833±0.00 2.136±0.38 N/A
ENST00000444932 N/A N/A N/A 0.451±0.00 4.932±0.00 N/A 1.403±0.00 N/A N/A 2.857±0.00 N/A 0.583±0.00 N/A N/A
ENST00000484110 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000024154 ENSMUST00000024970 0.039±0.00 N/A 0.014±0.00 0.063±0.02 0.043±0.01 0.069±0.05 0.060±0.04 0.049±0.03 0.018±0.00 0.024±0.00 N/A 0.763±0.30 0.058±0.02 142.393±39.38
ENSMUST00000161481 0.158±0.00 N/A N/A 0.418±0.00 0.040±0.00 0.070±0.00 0.026±0.00 N/A 0.009±0.00 N/A N/A 0.250±0.01 0.258±0.14 N/A
ENSMUSG00000033855 ENSMUST00000064035 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.144±0.13
ENSMUST00000112216 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.162±0.00
ENSMUST00000132384 N/A N/A N/A N/A N/A N/A N/A N/A 0.244±0.00 N/A N/A N/A N/A N/A
ENSMUST00000137138 4.050±0.40 2.054±0.81 N/A 0.820±0.00 2.095±0.27 3.208±0.81 1.552±0.47 2.758±0.35 1.047±0.24 5.550±0.83 N/A 4.019±0.82 N/A N/A
ENSMUST00000150023 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.690±0.00 N/A 1.195±0.14
ENSMUST00000153613 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000163588 3.406±2.72 2.174±0.40 5.484±0.00 0.784±0.33 1.690±0.49 2.678±0.76 1.661±0.79 3.884±1.20 1.206±0.64 3.455±0.19 0.624±0.45 4.641±1.45 6.075±1.87 4.576±1.87

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