C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003LZ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000052020-ENSDARG00000035924 CGP 7955 7:45616628-45692857
GeneTranscriptPositionBiotype
ENSDARG00000035924 (dync1li2)
dynein, cytoplasmic 1, light intermediate chain 2 		ENSDART00000037850 (dync1li2-001) 45662903-45692857 protein_coding
ENSDARG00000052020 (cmtm4)
CKLF-like MARVEL transmembrane domain containing 4 		ENSDART00000073745 (cmtm4-001) 45616628-45660042 protein_coding
CIL_0003LZ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000183723-ENSG00000135720 CGP 9606 16:66614750-66751798
GeneTranscriptPositionBiotype
ENSG00000135720 (DYNC1LI2)
dynein, cytoplasmic 1, light intermediate chain 2 		ENST00000258198 (DYNC1LI2-001) 66720893-66751798 protein_coding
ENST00000440564 (DYNC1LI2-004) 66732009-66751594 protein_coding
ENST00000443351 (DYNC1LI2-003) 66723478-66751601 protein_coding
ENST00000561727 (DYNC1LI2-010) 66733973-66736237 retained_intron
ENST00000563628 (DYNC1LI2-016) 66723570-66729099 protein_coding
ENST00000564090 (DYNC1LI2-011) 66742451-66751601 nonsense_mediated_decay
ENST00000564559 (DYNC1LI2-008) 66723601-66728219 nonsense_mediated_decay
ENST00000564833 (DYNC1LI2-006) 66725849-66732637 retained_intron
ENST00000565532 (DYNC1LI2-015) 66727997-66736197 retained_intron
ENST00000566150 (DYNC1LI2-013) 66736102-66751601 protein_coding
ENST00000567499 (DYNC1LI2-002) 66723601-66733546 retained_intron
ENST00000568180 (DYNC1LI2-012) 66736168-66751601 nonsense_mediated_decay
ENST00000568453 (DYNC1LI2-007) 66723606-66730348 retained_intron
ENST00000569320 (DYNC1LI2-014) 66723585-66730219 protein_coding
ENST00000570201 (DYNC1LI2-009) 66729040-66731034 processed_transcript
ENSG00000183723 (CMTM4)
CKLF-like MARVEL transmembrane domain containing 4 		ENST00000330687 (CMTM4-001) 66614750-66696707 protein_coding
ENST00000394106 (CMTM4-002) 66621680-66696707 protein_coding
ENST00000561680 (CMTM4-004) 66616567-66636485 protein_coding
ENST00000563952 (CMTM4-003) 66621757-66696707 protein_coding
ENST00000581487 (CMTM4-005) 66614750-66621775 retained_intron
ENSG00000260465 (RP11-63M22.2)
 ENST00000569274 (RP11-63M22.2-001) 66720897-66731785 antisense
ENSG00000260558 (RP11-63M22.1)
 ENST00000565082 (RP11-63M22.1-001) 66738263-66739326 lincRNA
CIL_0003LZ_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000096188-ENSMUSG00000035770 CGP 10090 8:104348191-104443047
GeneTranscriptPositionBiotype
ENSMUSG00000035770 (Dync1li2)
dynein, cytoplasmic 1 light intermediate chain 2 		ENSMUST00000041769 (Dync1li2-201) 104417674-104443047 protein_coding
ENSMUSG00000096188 (Cmtm4)
CKLF-like MARVEL transmembrane domain containing 4 		ENSMUST00000179802 (Cmtm4-201) 104348191-104395807 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003LZ_0001ENSDARG00000035924ENSDART00000037850ENSDARG00000052020ENSDART00000073745CIL_0003LZ_0002ENSG00000135720ENST00000258198ENST00000440564ENST00000443351ENST00000561727ENST00000563628ENST00000564090ENST00000564559ENST00000564833ENST00000565532ENST00000566150ENST00000567499ENST00000568180ENST00000568453ENST00000569320ENST00000570201ENSG00000183723ENST00000330687ENST00000394106ENST00000561680ENST00000563952ENST00000581487ENSG00000260465ENST00000569274ENSG00000260558ENST00000565082CIL_0003LZ_0003ENSMUSG00000035770ENSMUST00000041769ENSMUSG00000096188ENSMUST00000179802
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003LZ_0001ENSDARG00000035924ENSDART00000037850ENSDARG00000052020ENSDART00000073745CIL_0003LZ_0002ENSG00000135720ENST00000258198ENST00000440564ENST00000443351ENST00000567499ENSG00000183723ENST00000330687ENST00000563952ENST00000581487ENSG00000260465ENST00000569274ENSG00000260558ENST00000565082CIL_0003LZ_0003ENSMUSG00000035770ENSMUST00000041769ENSMUSG00000096188ENSMUST00000179802
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000035924 ENSDART00000037850 N/A N/A N/A 17.662±6.63 N/A N/A 5.757±2.55 7.979±1.05 1.436±0.00 N/A 9.651±0.00 N/A N/A N/A
ENSDARG00000052020 ENSDART00000073745 N/A N/A N/A 3.509±2.13 N/A N/A 1.062±0.41 1.333±0.00 0.119±0.00 N/A 1.276±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000135720 ENST00000258198 N/A N/A 9.442±0.00 15.666±0.00 N/A 10.179±0.00 3.376±0.00 1.947±0.00 22.726±0.00 9.886±0.00 3.001±0.00 4.901±2.21 9.877±0.08 16.439±0.00
ENST00000440564 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.064±0.00 N/A N/A N/A
ENST00000443351 N/A N/A N/A N/A N/A 10.217±0.00 N/A N/A N/A 6.555±0.00 N/A N/A N/A N/A
ENST00000561727 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000563628 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564090 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564559 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564833 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000565532 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566150 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000567499 N/A N/A N/A N/A 5.633±0.00 3.817±0.00 N/A 0.934±0.00 N/A N/A N/A N/A N/A N/A
ENST00000568180 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568453 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000569320 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000570201 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000183723 ENST00000330687 0.705±0.00 0.720±0.00 2.120±0.00 5.050±1.36 1.506±0.00 N/A N/A 12.601±0.00 0.568±0.18 3.241±0.00 0.774±0.66 1.429±0.24 0.821±0.11 2.296±0.47
ENST00000394106 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000561680 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000563952 N/A N/A N/A N/A N/A N/A N/A 1.879±0.00 N/A N/A N/A N/A N/A N/A
ENST00000581487 1.584±0.00 0.494±0.00 1.362±0.00 7.202±4.38 1.928±0.05 3.796±2.59 0.447±0.20 6.188±5.75 0.675±0.06 2.921±0.03 0.855±0.48 1.151±0.47 0.856±0.20 1.966±0.11
ENSG00000260465 ENST00000569274 35.055±0.00 29.855±0.00 N/A 35.023±18.34 41.399±0.00 28.869±19.82 10.026±5.81 16.528±13.40 4.798±0.00 14.851±6.26 10.311±0.00 15.269±4.27 11.523±0.37 26.394±2.59
ENSG00000260558 ENST00000565082 0.214±0.00 0.214±0.00 0.526±0.00 0.558±0.00 0.216±0.12 0.022±0.00 0.174±0.00 0.046±0.00 0.093±0.00 0.390±0.08 0.053±0.01 0.031±0.00 N/A 0.084±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000035770 ENSMUST00000041769 15.301±1.30 8.589±1.29 36.554±1.80 27.218±11.26 7.970±1.84 8.703±2.83 11.576±0.82 9.485±1.63 6.048±2.99 18.194±3.50 15.363±1.48 9.349±7.41 10.649±4.36 20.112±5.46
ENSMUSG00000096188 ENSMUST00000179802 9.201±2.71 19.841±1.34 11.342±2.58 7.400±0.58 6.643±0.55 41.607±3.65 4.134±0.27 18.399±1.21 4.899±2.87 13.771±0.93 1.663±0.14 14.529±2.68 20.414±16.57 1.082±0.48

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