C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: dynein, cytoplasmic 1 light intermediate chain 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000041769 Dync1li2-201 ENSMUSG00000035770 10090 - 8:104417674-104443047 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000041769
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000041769 15.301±1.30 8.589±1.29 36.554±1.80 27.218±11.26 7.970±1.84 8.703±2.83 11.576±0.82 9.485±1.63 6.048±2.99 18.194±3.50 15.363±1.48 9.349±7.41 10.649±4.36 20.112±5.46

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WN CIL_0007WN_0002 VISTA 8:104309522-104912018
CIL_0003LZ CIL_0003LZ_0003 CGP 8:104348191-104443047
CIL_0004IU CIL_0004IU_0002 CGP 8:104417674-104509910

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000226 IMP microtubule cytoskeleton organization
GO:0003777 IEA microtubule motor activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005813 IEA centrosome
GO:0005868 IEA cytoplasmic dynein complex
GO:0005874 IEA microtubule
GO:0006810 IEA transport
GO:0007018 IEA microtubule-based movement
GO:0008152 IEA metabolic process
GO:0016020 IEA membrane
GO:0051642 IMP centrosome localization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000258198 DYNC1LI2-001 protein_coding Homo_sapiens 0 2806
ENST00000440564 DYNC1LI2-004 protein_coding Homo_sapiens 0 771
ENST00000443351 DYNC1LI2-003 protein_coding Homo_sapiens 0 1554
ENST00000561727 DYNC1LI2-010 retained_intron Homo_sapiens 0 337
ENST00000563628 DYNC1LI2-016 protein_coding Homo_sapiens 0 355
ENST00000564090 DYNC1LI2-011 nonsense_mediated_decay Homo_sapiens 0 189
ENST00000564559 DYNC1LI2-008 nonsense_mediated_decay Homo_sapiens 0 344
ENST00000564833 DYNC1LI2-006 retained_intron Homo_sapiens 0 737
ENST00000565532 DYNC1LI2-015 retained_intron Homo_sapiens 0 612
ENST00000566150 DYNC1LI2-013 protein_coding Homo_sapiens 0 422
ENST00000567499 DYNC1LI2-002 retained_intron Homo_sapiens 0 944
ENST00000568180 DYNC1LI2-012 nonsense_mediated_decay Homo_sapiens 0 189
ENST00000568453 DYNC1LI2-007 retained_intron Homo_sapiens 0 508
ENST00000569320 DYNC1LI2-014 protein_coding Homo_sapiens 0 652
ENST00000570201 DYNC1LI2-009 processed_transcript Homo_sapiens 0 257

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