C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003PL_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000152266-ENSG00000197601 CGP 9606 11:13492055-13732346
GeneTranscriptPositionBiotype
ENSG00000152266 (PTH)
parathyroid hormone 		ENST00000282091 (PTH-001) 13492055-13496020 protein_coding
ENST00000529816 (PTH-002) 13492099-13496181 protein_coding
ENSG00000197601 (FAR1)
fatty acyl CoA reductase 1 		ENST00000354817 (FAR1-001) 13668670-13732346 protein_coding
ENST00000524933 (FAR1-004) 13694900-13711099 retained_intron
ENST00000527202 (FAR1-005) 13710724-13715843 processed_transcript
ENST00000532502 (FAR1-002) 13719903-13732346 protein_coding
ENST00000532701 (FAR1-006) 13668711-13713084 protein_coding
ENST00000532769 (FAR1-003) 13694756-13700567 retained_intron
ENSG00000200685 (Y_RNA)
Y RNA 		ENST00000363815 (Y_RNA.1-376) 13686550-13686658 misc_RNA
ENSG00000228901 (HMGN2P36)
high mobility group nucleosomal binding domain 2 pseudogene 36 		ENST00000529541 (HMGN2P36-001) 13610363-13610771 processed_pseudogene
ENSG00000254791 (FAR1-IT1)
FAR1 intronic transcript 1 (non-protein coding) 		ENST00000525233 (FAR1-IT1-001) 13669327-13670149 sense_intronic
CIL_0003PL_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000059077-ENSMUSG00000030759 CGP 10090 7:113385576-113571511
GeneTranscriptPositionBiotype
ENSMUSG00000030759 (Far1)
fatty acyl CoA reductase 1 		ENSMUST00000033018 (Far1-001) 113513834-113571511 protein_coding
ENSMUST00000067929 (Far1-003) 113513861-113571511 protein_coding
ENSMUST00000122890 (Far1-006) 113514098-113539390 protein_coding
ENSMUST00000123591 (Far1-004) 113547459-113553143 retained_intron
ENSMUST00000123845 (Far1-002) 113513861-113550505 retained_intron
ENSMUST00000129087 (Far1-005) 113513861-113547581 protein_coding
ENSMUST00000136158 (Far1-008) 113513877-113550040 protein_coding
ENSMUST00000151133 (Far1-010) 113566100-113568205 retained_intron
ENSMUST00000155183 (Far1-009) 113560915-113568150 retained_intron
ENSMUST00000156554 (Far1-007) 113513881-113526343 retained_intron
ENSMUST00000164745 (Far1-201) 113513862-113570458 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003PL_0001ENSG00000152266ENST00000282091ENST00000529816ENSG00000197601ENST00000354817ENST00000524933ENST00000527202ENST00000532502ENST00000532701ENST00000532769ENSG00000200685ENST00000363815ENSG00000228901ENST00000529541ENSG00000254791ENST00000525233CIL_0003PL_0002ENSMUSG00000030759ENSMUST00000033018ENSMUST00000067929ENSMUST00000122890ENSMUST00000123591ENSMUST00000123845ENSMUST00000129087ENSMUST00000136158ENSMUST00000151133ENSMUST00000155183ENSMUST00000156554ENSMUST00000164745
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003PL_0001ENSG00000152266ENST00000282091ENST00000529816ENSG00000197601ENST00000354817ENST00000524933ENST00000527202ENST00000532502ENST00000532701ENSG00000200685ENST00000363815ENSG00000228901ENST00000529541ENSG00000254791ENST00000525233CIL_0003PL_0002ENSMUSG00000030759ENSMUST00000033018ENSMUST00000067929ENSMUST00000123591ENSMUST00000136158ENSMUST00000164745
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000152266 ENST00000282091 N/A N/A N/A N/A N/A 0.047±0.01 N/A N/A N/A N/A N/A N/A 0.044±0.00 N/A
ENST00000529816 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.065±0.00 N/A N/A
ENSG00000197601 ENST00000354817 4.929±0.00 4.857±0.00 N/A 8.734±0.84 6.377±0.36 6.236±1.35 3.040±1.69 6.990±0.00 0.434±0.00 3.697±0.62 1.699±0.85 6.034±1.41 3.000±0.48 4.396±1.22
ENST00000524933 N/A N/A N/A N/A N/A N/A N/A 0.626±0.00 N/A N/A N/A N/A N/A N/A
ENST00000527202 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.715±0.00 N/A N/A N/A
ENST00000532502 N/A 0.597±0.00 1.600±0.00 2.316±0.31 1.506±0.00 5.576±0.00 0.768±0.00 0.711±0.00 2.487±0.00 2.437±1.65 0.474±0.00 2.066±1.51 N/A 1.848±1.13
ENST00000532701 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.406±0.00 N/A N/A N/A
ENST00000532769 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000200685 ENST00000363815 N/A N/A N/A N/A N/A N/A N/A 0.459±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000228901 ENST00000529541 N/A 0.047±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000254791 ENST00000525233 N/A 1.124±0.00 0.893±0.00 0.856±0.00 0.540±0.08 2.064±0.00 0.091±0.00 0.463±0.00 2.107±0.00 0.132±0.06 N/A 0.787±0.30 0.176±0.00 0.504±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000030759 ENSMUST00000033018 3.366±2.34 1.260±0.48 23.164±3.92 11.769±5.44 3.706±1.42 5.623±1.83 1.566±0.12 5.207±0.71 9.005±2.01 5.055±1.75 1.489±0.26 7.080±2.88 4.943±1.79 N/A
ENSMUST00000067929 N/A N/A 4.324±0.91 N/A N/A 1.456±0.00 0.784±0.03 9.320±2.99 0.186±0.04 2.382±0.64 N/A 4.991±1.34 3.063±0.22 3.284±1.29
ENSMUST00000122890 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000123591 2.926±1.61 1.595±0.39 N/A N/A 3.832±0.75 5.687±1.80 N/A N/A 0.271±0.15 3.834±0.33 N/A 10.994±2.74 N/A N/A
ENSMUST00000123845 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000129087 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136158 N/A N/A N/A N/A N/A N/A N/A N/A 0.415±0.05 N/A N/A N/A N/A N/A
ENSMUST00000151133 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155183 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156554 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000164745 1.610±0.54 1.348±0.00 N/A N/A 2.058±0.00 3.249±1.09 0.735±0.17 N/A 0.067±0.00 1.291±0.00 0.442±0.00 3.285±1.42 4.266±2.19 2.212±0.78

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