C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transient receptor potential cation channel, subfamily M, member 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000171176 Trpm8-201 ENSMUSG00000036251 10090 + 1:88318913-88388851 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLiverOvaryPlacentaTestisENSMUST00000171176
Transcript ID Adipose Brain Breast Colon Heart Kidney Liver Ovary Placenta Testis
ENSMUST00000171176 0.009±0.00 0.026±0.02 0.041±0.01 0.016±0.00 0.015±0.00 0.014±0.00 0.014±0.01 0.007±0.00 0.009±0.00 2.425±0.27

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007H4 CIL_0007H4_0002 CGP 1:88262471-88389293
CIL_0003R4 CIL_0003R4_0002 CGP 1:88277661-88426438

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005216 IDA ion channel activity
GO:0005262 IDA calcium channel activity
GO:0006816 IDA calcium ion transport
GO:0006874 IDA cellular calcium ion homeostasis
GO:0009266 IDA response to temperature stimulus
GO:0009409 IDA response to cold
GO:0009897 IDA external side of plasma membrane
GO:0016020 IDA membrane
GO:0016021 ISS integral component of membrane
GO:0016048 IEA detection of temperature stimulus
GO:0034220 IDA ion transmembrane transport
GO:0042803 IPI protein homodimerization activity
GO:0050955 IDA thermoception
GO:0051289 IDA protein homotetramerization
GO:0070207 IDA protein homotrimerization
GO:0070588 IDA calcium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000324695 TRPM8-001 protein_coding Homo_sapiens 0 3962
ENST00000433712 TRPM8-201 protein_coding Homo_sapiens 0 2316
ENST00000439148 TRPM8-006 nonsense_mediated_decay Homo_sapiens 0 710
ENST00000444298 TRPM8-013 nonsense_mediated_decay Homo_sapiens 0 1242
ENST00000456930 TRPM8-014 protein_coding Homo_sapiens 0 1136
ENST00000475044 TRPM8-010 processed_transcript Homo_sapiens 0 697
ENST00000477103 TRPM8-015 retained_intron Homo_sapiens 0 641
ENST00000477698 TRPM8-005 retained_intron Homo_sapiens 0 337
ENST00000487033 TRPM8-012 retained_intron Homo_sapiens 0 466
ENST00000490797 TRPM8-004 retained_intron Homo_sapiens 0 654

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