C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003WK_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000012840-ENSDARG00000007791 CGP 7955 5:59092926-59147207
GeneTranscriptPositionBiotype
ENSDARG00000007791 (ppp2r1a)
protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), alpha isoform 		ENSDART00000097389 (ppp2r1a-201) 59122336-59147200 protein_coding
ENSDART00000135344 (ppp2r1a-001) 59122333-59147207 protein_coding
ENSDARG00000012840 (alg9)
asparagine-linked glycosylation 9 homolog (S. cerevisiae, alpha- 1,2-mannosyltransferase) 		ENSDART00000005090 (alg9-001) 59092926-59112290 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0003WK_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000032059-ENSMUSG00000032058 CGP 10090 9:50775019-50894229
GeneTranscriptPositionBiotype
ENSMUSG00000032059 (Alg9)
asparagine-linked glycosylation 9 (alpha 1,2 mannosyltransferase) 		ENSMUST00000034561 (Alg9-001) 50775019-50843528 protein_coding
ENSMUST00000159576 (Alg9-003) 50775367-50789515 protein_coding
ENSMUST00000161200 (Alg9-006) 50823043-50842971 processed_transcript
ENSMUST00000162073 (Alg9-002) 50775305-50843542 nonsense_mediated_decay
ENSMUST00000162363 (Alg9-004) 50775546-50783328 processed_transcript
ENSMUST00000162442 (Alg9-005) 50776109-50779104 processed_transcript
ENSMUST00000162596 (Alg9-007) 50835571-50843091 processed_transcript
ENSMUST00000175728 (Alg9-009) 50808679-50843362 protein_coding
ENSMUST00000177320 (Alg9-008) 50802069-50842763 nonsense_mediated_decay
ENSMUSG00000037112 (Sik2)
salt inducible kinase 2 		ENSMUST00000041375 (Sik2-001) 50892801-51009073 protein_coding
ENSMUST00000068484 (Sik2-004) 50928264-51009026 processed_transcript
ENSMUST00000176327 (Sik2-008) 50995584-51009011 retained_intron
ENSMUST00000176491 (Sik2-002) 50892801-51008973 nonsense_mediated_decay
ENSMUST00000176663 (Sik2-007) 50892801-51008936 protein_coding
ENSMUST00000176824 (Sik2-006) 50892801-51008936 protein_coding
ENSMUST00000177203 (Sik2-003) 50930562-51008984 processed_transcript
ENSMUST00000177346 (Sik2-005) 50933836-51009000 retained_intron
ENSMUSG00000037971 (1110032A03Rik)
RIKEN cDNA 1110032A03 gene 		ENSMUST00000042468 (1110032A03Rik-001) 50762828-50768452 protein_coding
ENSMUST00000042576 (1110032A03Rik-002) 50763703-50766102 protein_coding
ENSMUST00000176160 (1110032A03Rik-008) 50768594-50770948 processed_transcript
ENSMUST00000176238 (1110032A03Rik-010) 50763857-50768160 protein_coding
ENSMUST00000176682 (1110032A03Rik-004) 50763730-50764562 retained_intron
ENSMUST00000176894 (1110032A03Rik-003) 50763727-50775520 retained_intron
ENSMUST00000177022 (1110032A03Rik-005) 50764811-50768169 processed_transcript
ENSMUST00000177142 (1110032A03Rik-006) 50764697-50768098 processed_transcript
ENSMUST00000177546 (1110032A03Rik-007) 50763701-50768121 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003WK_0001ENSDARG00000007791ENSDART00000097389ENSDART00000135344ENSDARG00000012840ENSDART00000005090CIL_0003WK_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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003WK_0001ENSDARG00000007791ENSDART00000097389ENSDART00000135344ENSDARG00000012840ENSDART00000005090CIL_0003WK_0002ENSMUSG00000032059ENSMUST00000034561ENSMUST00000162073ENSMUSG00000037112ENSMUST00000041375ENSMUST00000068484ENSMUST00000176327ENSMUST00000176491ENSMUST00000176663ENSMUST00000176824ENSMUSG00000037971ENSMUST00000042468ENSMUST00000042576ENSMUST00000176238ENSMUST00000177546
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000007791 ENSDART00000097389 N/A N/A N/A 47.802±15.91 N/A N/A 1.515±0.91 3.509±1.78 0.814±0.00 N/A N/A N/A N/A N/A
ENSDART00000135344 N/A N/A N/A 144.600±43.08 N/A N/A 38.560±9.16 20.767±0.00 5.031±0.00 N/A 23.214±0.00 N/A N/A N/A
ENSDARG00000012840 ENSDART00000005090 N/A N/A N/A 22.288±2.28 N/A N/A 4.617±1.14 2.613±1.99 0.879±0.00 N/A 1.935±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000032059 ENSMUST00000034561 11.544±1.92 6.910±2.00 8.017±0.29 11.803±6.53 10.751±2.90 8.331±2.77 4.858±0.22 8.877±0.93 6.267±1.26 10.014±1.69 2.106±0.46 7.509±2.19 8.921±1.70 17.134±1.55
ENSMUST00000159576 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161200 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162073 7.914±1.06 6.686±1.90 4.736±0.00 16.815±3.97 5.381±0.98 8.724±0.94 N/A 5.125±0.43 3.290±0.71 5.178±1.04 2.013±0.00 8.090±1.92 7.510±1.97 N/A
ENSMUST00000162363 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162442 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162596 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000175728 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000177320 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000037112 ENSMUST00000041375 22.899±15.05 11.809±2.41 N/A N/A 15.844±4.68 4.429±1.33 1.930±0.87 3.785±0.70 1.552±0.41 3.862±0.50 N/A 6.685±2.36 N/A 7.061±0.60
ENSMUST00000068484 N/A 70.190±26.09 N/A N/A 83.482±0.00 N/A N/A N/A N/A N/A N/A 31.621±3.78 N/A N/A
ENSMUST00000176327 N/A 79.025±8.05 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176491 N/A N/A N/A N/A N/A N/A 1.216±0.00 N/A N/A N/A N/A N/A N/A 8.396±0.62
ENSMUST00000176663 26.581±9.81 7.263±2.74 3.351±0.12 3.886±1.04 15.187±0.00 3.739±0.40 1.724±0.32 N/A 2.581±1.62 4.389±0.00 3.324±0.00 4.860±1.85 2.315±0.43 N/A
ENSMUST00000176824 13.429±4.69 5.729±0.69 2.625±0.44 1.767±0.13 9.069±0.21 2.138±0.17 1.032±0.19 2.260±0.47 N/A N/A N/A 3.490±0.79 1.122±0.00 N/A
ENSMUST00000177203 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000177346 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000037971 ENSMUST00000042468 N/A N/A N/A N/A N/A N/A N/A N/A 3.749±0.30 N/A 2.075±0.16 3.505±0.13 N/A 7.167±0.00
ENSMUST00000042576 N/A N/A 11.788±0.00 9.102±0.00 N/A N/A N/A N/A N/A N/A 2.991±0.47 8.382±0.15 N/A 113.953±30.18
ENSMUST00000176160 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176238 54.924±23.58 28.621±2.28 24.906±0.00 N/A 46.135±12.31 24.193±2.97 14.803±3.40 51.384±4.65 26.963±1.76 35.966±2.58 7.272±0.75 26.741±5.75 28.520±0.00 251.993±10.88
ENSMUST00000176682 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176894 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000177022 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000177142 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000177546 N/A N/A N/A 20.026±0.00 N/A N/A N/A N/A N/A N/A N/A 39.109±0.00 51.969±14.32 135.357±0.00

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