C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003YA_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000060477-ENSDARG00000091513 CGP 7955 1:29071032-29354278
GeneTranscriptPositionBiotype
ENSDARG00000060477 (vps8)
vacuolar protein sorting 8 homolog (S. cerevisiae) 		ENSDART00000041419 (vps8-201) 29071032-29298137 protein_coding
ENSDART00000101779 (vps8-001) 29071032-29298143 protein_coding
ENSDART00000134311 (vps8-004) 29087711-29298143 protein_coding
ENSDART00000143639 (vps8-003) 29071032-29298143 protein_coding
ENSDART00000146783 (vps8-002) 29090751-29144452 protein_coding
ENSDARG00000082429 (dre-mir-740)
dre-mir-740 		ENSDART00000118020 (dre-mir-740.1-201) 29153407-29153519 miRNA
ENSDARG00000091513 (C1H3orf70 (2 of 2))
chromosome 3 open reading frame 70 		ENSDART00000125759 (C1H3orf70 (2 of 2)-001) 29331168-29354278 protein_coding
CIL_0003YA_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000156931-ENSG00000187068 CGP 9606 3:184812143-185153014
GeneTranscriptPositionBiotype
ENSG00000156931 (VPS8)
vacuolar protein sorting 8 homolog (S. cerevisiae) 		ENST00000287546 (VPS8-201) 184812143-185052614 protein_coding
ENST00000421069 (VPS8-019) 184869523-184900931 nonsense_mediated_decay
ENST00000422105 (VPS8-010) 184812195-184849141 protein_coding
ENST00000424463 (VPS8-004) 184824545-184840537 protein_coding
ENST00000424721 (VPS8-011) 184824545-184834742 nonsense_mediated_decay
ENST00000426319 (VPS8-005) 184834675-184838746 protein_coding
ENST00000436792 (VPS8-002) 184812171-185052612 protein_coding
ENST00000441141 (VPS8-009) 184817206-184834717 protein_coding
ENST00000445089 (VPS8-012) 184817306-184834660 protein_coding
ENST00000446204 (VPS8-003) 184812183-185052604 protein_coding
ENST00000452140 (VPS8-007) 184915383-184926646 nonsense_mediated_decay
ENST00000452666 (VPS8-013) 184826163-184852538 nonsense_mediated_decay
ENST00000453056 (VPS8-008) 184812439-184826231 protein_coding
ENST00000458721 (VPS8-020) 184868989-184915408 nonsense_mediated_decay
ENST00000460158 (VPS8-015) 184832757-184834951 retained_intron
ENST00000463687 (VPS8-022) 184919056-184930560 processed_transcript
ENST00000465213 (VPS8-018) 184855777-184868310 retained_intron
ENST00000465818 (VPS8-016) 184849029-184855746 retained_intron
ENST00000469479 (VPS8-014) 184832696-184849347 retained_intron
ENST00000469713 (VPS8-017) 184849453-184853886 retained_intron
ENST00000471655 (VPS8-026) 184812516-184815820 processed_transcript
ENST00000475580 (VPS8-025) 184812509-184815820 processed_transcript
ENST00000485024 (VPS8-024) 184812196-184816230 processed_transcript
ENST00000488255 (VPS8-023) 184982418-184996501 retained_intron
ENST00000492449 (VPS8-006) 184885969-185052311 retained_intron
ENST00000495190 (VPS8-021) 184894703-184901363 retained_intron
ENSG00000187068 (C3orf70)
chromosome 3 open reading frame 70 		ENST00000335012 (C3orf70-001) 185078050-185153014 protein_coding
CIL_0003YA_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000033653-ENSMUSG00000043391 CGP 10090 16:21423118-21694665
GeneTranscriptPositionBiotype
ENSMUSG00000043391 (2510009E07Rik)
RIKEN cDNA 2510009E07 gene 		ENSMUST00000053336 (2510009E07Rik-201) 21649045-21694665 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003YA_0001ENSDARG00000060477ENSDART00000041419ENSDART00000101779ENSDART00000134311ENSDART00000143639ENSDART00000146783ENSDARG00000082429ENSDART00000118020ENSDARG00000091513ENSDART00000125759CIL_0003YA_0002ENSG00000156931ENST00000287546ENST00000421069ENST00000422105ENST00000424463ENST00000424721ENST00000426319ENST00000436792ENST00000441141ENST00000445089ENST00000446204ENST00000452140ENST00000452666ENST00000453056ENST00000458721ENST00000460158ENST00000463687ENST00000465213ENST00000465818ENST00000469479ENST00000469713ENST00000471655ENST00000475580ENST00000485024ENST00000488255ENST00000492449ENST00000495190ENSG00000187068ENST00000335012CIL_0003YA_0003ENSMUSG00000043391ENSMUST00000053336
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003YA_0001ENSDARG00000060477ENSDART00000041419ENSDART00000101779ENSDART00000143639ENSDARG00000082429ENSDART00000118020ENSDARG00000091513ENSDART00000125759CIL_0003YA_0002ENSG00000156931ENST00000287546ENST00000424463ENST00000436792ENST00000446204ENST00000465213ENST00000469713ENST00000492449ENSG00000187068ENST00000335012CIL_0003YA_0003ENSMUSG00000043391ENSMUST00000053336
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000060477 ENSDART00000041419 N/A N/A N/A 3.118±0.00 N/A N/A N/A N/A 0.085±0.00 N/A N/A N/A N/A N/A
ENSDART00000101779 N/A N/A N/A N/A N/A N/A N/A 0.192±0.00 N/A N/A 1.465±0.00 N/A N/A N/A
ENSDART00000134311 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000143639 N/A N/A N/A 2.405±3.10 N/A N/A 2.662±2.48 2.327±2.22 0.200±0.00 N/A 1.550±0.00 N/A N/A N/A
ENSDART00000146783 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000082429 ENSDART00000118020 N/A N/A N/A 97.654±1.60 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000091513 ENSDART00000125759 N/A N/A N/A 9.034±2.47 N/A N/A 2.501±0.50 1.280±0.28 0.076±0.00 N/A 1.177±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000156931 ENST00000287546 N/A N/A N/A 2.226±1.24 N/A N/A 1.466±0.00 N/A N/A N/A 1.362±0.00 N/A N/A N/A
ENST00000421069 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000422105 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000424463 N/A N/A N/A N/A N/A 3.141±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000424721 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000426319 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000436792 N/A N/A 1.763±0.00 1.263±0.00 5.524±0.00 1.554±0.27 4.133±2.86 0.786±0.00 2.451±0.00 N/A 1.298±0.00 3.465±0.92 1.355±0.23 2.851±0.60
ENST00000441141 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000445089 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000446204 0.551±0.00 0.758±0.00 N/A N/A 1.233±0.00 N/A N/A 0.912±0.00 0.375±0.00 0.945±0.00 N/A N/A 0.985±0.58 2.906±0.00
ENST00000452140 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000452666 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000453056 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000458721 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000460158 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000463687 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000465213 N/A N/A 13.783±0.00 13.738±0.00 21.174±0.00 13.678±0.00 N/A 8.543±0.00 12.755±0.00 16.360±0.00 10.627±0.00 29.546±0.00 N/A N/A
ENST00000465818 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469479 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469713 N/A N/A N/A N/A N/A N/A N/A 3.977±0.00 N/A 21.396±0.00 N/A N/A N/A N/A
ENST00000471655 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475580 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485024 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488255 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000492449 N/A N/A N/A N/A N/A N/A 1.792±0.00 N/A 0.327±0.00 N/A 1.509±0.00 N/A N/A N/A
ENST00000495190 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000187068 ENST00000335012 1.550±0.00 4.097±0.00 0.292±0.00 5.755±2.30 1.953±0.31 3.940±1.02 0.496±0.16 0.398±0.28 3.965±3.81 0.845±0.13 0.343±0.09 1.776±1.26 0.943±0.61 4.752±1.87
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000043391 ENSMUST00000053336 11.096±3.64 5.639±1.07 6.592±0.65 11.674±4.78 7.259±0.32 9.522±0.43 4.621±0.45 6.768±0.53 1.740±0.37 12.553±0.56 4.200±1.55 11.585±2.76 1.250±0.69 0.327±0.14

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