C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vacuolar protein sorting 8 homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000436792 VPS8-002 ENSG00000156931 9606 + 3:184812171-185052612 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000436792
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000436792 1.763±0.00 1.263±0.00 5.524±0.00 1.554±0.27 4.133±2.86 0.786±0.00 2.451±0.00 1.298±0.00 3.465±0.92 1.355±0.23 2.851±0.60

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003YA CIL_0003YA_0002 CGP 3:184812143-185153014

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005488 IEA binding
GO:0005515 IEA protein binding
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000117598 Vps8-011 protein_coding Mus_musculus 0 4573
ENSMUST00000115397 Vps8-202 protein_coding Mus_musculus 0 4545
ENSMUST00000096191 Vps8-002 protein_coding Mus_musculus 0 4165
ENSMUST00000096192 Vps8-201 protein_coding Mus_musculus 0 3251
ENSMUST00000118923 Vps8-001 protein_coding Mus_musculus 0 3251
ENSMUST00000125487 Vps8-009 protein_coding Mus_musculus 0 2881
ENSMUST00000118138 Vps8-004 protein_coding Mus_musculus 0 2198
ENSMUST00000122235 Vps8-003 protein_coding Mus_musculus 0 913
ENSMUST00000150765 Vps8-007 retained_intron Mus_musculus 0 512
ENSMUST00000156580 Vps8-006 nonsense_mediated_decay Mus_musculus 0 459
ENSMUST00000134650 Vps8-005 retained_intron Mus_musculus 0 390

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