C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: vacuolar protein sorting 8 homolog (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000156931 VPS8 9606 + 3:184812143-185052614 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000287546 VPS8-201 184812143-185052614 protein_coding
  ENST00000421069 VPS8-019 184869523-184900931 nonsense_mediated_decay
  ENST00000422105 VPS8-010 184812195-184849141 protein_coding
  ENST00000424463 VPS8-004 184824545-184840537 protein_coding
  ENST00000424721 VPS8-011 184824545-184834742 nonsense_mediated_decay
  ENST00000426319 VPS8-005 184834675-184838746 protein_coding
  ENST00000436792 VPS8-002 184812171-185052612 protein_coding
  ENST00000441141 VPS8-009 184817206-184834717 protein_coding
  ENST00000445089 VPS8-012 184817306-184834660 protein_coding
  ENST00000446204 VPS8-003 184812183-185052604 protein_coding
  ENST00000452140 VPS8-007 184915383-184926646 nonsense_mediated_decay
  ENST00000452666 VPS8-013 184826163-184852538 nonsense_mediated_decay
  ENST00000453056 VPS8-008 184812439-184826231 protein_coding
  ENST00000458721 VPS8-020 184868989-184915408 nonsense_mediated_decay
  ENST00000460158 VPS8-015 184832757-184834951 retained_intron
  ENST00000463687 VPS8-022 184919056-184930560 processed_transcript
  ENST00000465213 VPS8-018 184855777-184868310 retained_intron
  ENST00000465818 VPS8-016 184849029-184855746 retained_intron
  ENST00000469479 VPS8-014 184832696-184849347 retained_intron
  ENST00000469713 VPS8-017 184849453-184853886 retained_intron
  ENST00000471655 VPS8-026 184812516-184815820 processed_transcript
  ENST00000475580 VPS8-025 184812509-184815820 processed_transcript
  ENST00000485024 VPS8-024 184812196-184816230 processed_transcript
  ENST00000488255 VPS8-023 184982418-184996501 retained_intron
  ENST00000492449 VPS8-006 184885969-185052311 retained_intron
  ENST00000495190 VPS8-021 184894703-184901363 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000287546ENST00000424463ENST00000436792ENST00000446204ENST00000465213ENST00000469713ENST00000492449
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000287546 N/A N/A N/A 2.226±1.24 N/A N/A 1.466±0.00 N/A N/A N/A 1.362±0.00 N/A N/A N/A
ENST00000424463 N/A N/A N/A N/A N/A 3.141±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000436792 N/A N/A 1.763±0.00 1.263±0.00 5.524±0.00 1.554±0.27 4.133±2.86 0.786±0.00 2.451±0.00 N/A 1.298±0.00 3.465±0.92 1.355±0.23 2.851±0.60
ENST00000446204 0.551±0.00 0.758±0.00 N/A N/A 1.233±0.00 N/A N/A 0.912±0.00 0.375±0.00 0.945±0.00 N/A N/A 0.985±0.58 2.906±0.00
ENST00000465213 N/A N/A 13.783±0.00 13.738±0.00 21.174±0.00 13.678±0.00 N/A 8.543±0.00 12.755±0.00 16.360±0.00 10.627±0.00 29.546±0.00 N/A N/A
ENST00000469713 N/A N/A N/A N/A N/A N/A N/A 3.977±0.00 N/A 21.396±0.00 N/A N/A N/A N/A
ENST00000492449 N/A N/A N/A N/A N/A N/A 1.792±0.00 N/A 0.327±0.00 N/A 1.509±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003YA CIL_0003YA_0002 CGP 3:184812143-185153014

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005488 IEA binding
GO:0005515 IEA protein binding
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000060477 vps8 vacuolar protein sorting 8 homolog (S. cerevisiae) protein_coding Danio_rerio
ENSMUSG00000033653 Vps8 vacuolar protein sorting 8 homolog (S. cerevisiae) protein_coding Mus_musculus

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