C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: vacuolar protein sorting 8 homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000492449 VPS8-006 ENSG00000156931 9606 + 3:184885969-185052311 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartLiverMuscleENST00000492449
Transcript ID Heart Liver Muscle
ENST00000492449 1.792±0.00 0.327±0.00 1.509±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003YA CIL_0003YA_0002 CGP 3:184812143-185153014

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000115397 Vps8-202 protein_coding Mus_musculus 0 2647
ENSMUST00000117598 Vps8-011 protein_coding Mus_musculus 0 2647
ENSMUST00000125487 Vps8-009 protein_coding Mus_musculus 0 2366
ENSMUST00000096191 Vps8-002 protein_coding Mus_musculus 0 2239
ENSMUST00000118138 Vps8-004 protein_coding Mus_musculus 0 2198
ENSMUST00000096192 Vps8-201 protein_coding Mus_musculus 0 1352
ENSMUST00000118923 Vps8-001 protein_coding Mus_musculus 0 1352
ENSMUST00000150765 Vps8-007 retained_intron Mus_musculus 0 512
ENSMUST00000156580 Vps8-006 nonsense_mediated_decay Mus_musculus 0 459
ENSMUST00000122235 Vps8-003 protein_coding Mus_musculus 0 418
ENSMUST00000134650 Vps8-005 retained_intron Mus_musculus 0 390

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