C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vacuolar protein sorting 8 homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000446204 VPS8-003 ENSG00000156931 9606 + 3:184812183-185052604 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastKidneyLiverLungPlacentaTestisENST00000446204
Transcript ID Adipose Adrenal Breast Kidney Liver Lung Placenta Testis
ENST00000446204 0.551±0.00 0.758±0.00 1.233±0.00 0.912±0.00 0.375±0.00 0.945±0.00 0.985±0.58 2.906±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003YA CIL_0003YA_0002 CGP 3:184812143-185153014

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005488 IEA binding
GO:0005515 IEA protein binding
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000115397 Vps8-202 protein_coding Mus_musculus 0 2342
ENSMUST00000117598 Vps8-011 protein_coding Mus_musculus 0 2342
ENSMUST00000118138 Vps8-004 protein_coding Mus_musculus 0 2198
ENSMUST00000125487 Vps8-009 protein_coding Mus_musculus 0 2061
ENSMUST00000096191 Vps8-002 protein_coding Mus_musculus 0 1934
ENSMUST00000096192 Vps8-201 protein_coding Mus_musculus 0 1906
ENSMUST00000118923 Vps8-001 protein_coding Mus_musculus 0 1906
ENSMUST00000122235 Vps8-003 protein_coding Mus_musculus 0 913
ENSMUST00000150765 Vps8-007 retained_intron Mus_musculus 0 512
ENSMUST00000156580 Vps8-006 nonsense_mediated_decay Mus_musculus 0 459
ENSMUST00000134650 Vps8-005 retained_intron Mus_musculus 0 390

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