Institute of Cardiovascular Regeneration Webtool Repository

Warning (512): _cake_core_ cache was unable to write 'cake_dev_eng' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'cake_dev_eng'
$value = array(
	'LC_MESSAGES' => array()
)
$config = '_cake_core_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/persistent/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
I18n::translate() - CORE/Cake/I18n/I18n.php, line 237
__d - CORE/Cake/basics.php, line 617
Cache::write() - CORE/Cake/Cache/Cache.php, line 321
DataSource::listSources() - CORE/Cake/Model/Datasource/DataSource.php, line 110
Mysql::listSources() - CORE/Cake/Model/Datasource/Database/Mysql.php, line 219
Model::setSource() - CORE/Cake/Model/Model.php, line 1142
Model::getDataSource() - CORE/Cake/Model/Model.php, line 3551
Model::query() - CORE/Cake/Model/Model.php, line 3353
RegionController::show() - APP/Controller/RegionController.php, line 338
ReflectionMethod::invokeArgs() - [internal], line ??
Controller::invokeAction() - CORE/Cake/Controller/Controller.php, line 490
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 191
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Warning (512): _cake_model_ cache was unable to write 'default_citloci_list' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'default_citloci_list'
$value = null
$config = '_cake_model_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/models/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
DataSource::listSources() - CORE/Cake/Model/Datasource/DataSource.php, line 110
Mysql::listSources() - CORE/Cake/Model/Datasource/Database/Mysql.php, line 219
Model::setSource() - CORE/Cake/Model/Model.php, line 1142
Model::getDataSource() - CORE/Cake/Model/Model.php, line 3551
Model::query() - CORE/Cake/Model/Model.php, line 3353
RegionController::show() - APP/Controller/RegionController.php, line 338
ReflectionMethod::invokeArgs() - [internal], line ??
Controller::invokeAction() - CORE/Cake/Controller/Controller.php, line 490
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 191
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Warning (512): _cake_model_ cache was unable to write 'default_citloci_list' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'default_citloci_list'
$value = array(
	(int) 0 => 'conserved_region_elements',
	(int) 1 => 'conserved_regions',
	(int) 2 => 'diffexp',
	(int) 3 => 'experiment',
	(int) 4 => 'expressed_transcripts',
	(int) 5 => 'external_accessions',
	(int) 6 => 'genes',
	(int) 7 => 'go_annotations',
	(int) 8 => 'homologues',
	(int) 9 => 'maptranscripttoregion',
	(int) 10 => 'organism',
	(int) 11 => 'sample',
	(int) 12 => 'study',
	(int) 13 => 'synonyms',
	(int) 14 => 'transcripts'
)
$config = '_cake_model_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/models/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
DataSource::listSources() - CORE/Cake/Model/Datasource/DataSource.php, line 110
Mysql::listSources() - CORE/Cake/Model/Datasource/Database/Mysql.php, line 236
Model::setSource() - CORE/Cake/Model/Model.php, line 1142
Model::getDataSource() - CORE/Cake/Model/Model.php, line 3551
Model::query() - CORE/Cake/Model/Model.php, line 3353
RegionController::show() - APP/Controller/RegionController.php, line 338
ReflectionMethod::invokeArgs() - [internal], line ??
Controller::invokeAction() - CORE/Cake/Controller/Controller.php, line 490
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 191
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Region Summary

CIL_000419_0001 (Click to Hide/Show)

Source ID	Type	Tax ID	Position
ENSDARG00000056587-ENSDARG00000056587	CGP	7955	7:28581189-28823102
Gene	Transcript	Position	Biotype
ENSDARG00000056587 (cyp2r1) cytochrome P450, family 2, subfamily R, polypeptide 1	ENSDART00000079091 (cyp2r1-001)	28817515-28823102	protein_coding
	ENSDART00000148417 (cyp2r1-002)	28581189-28821481	protein_coding
	ENSDART00000148782 (cyp2r1-004)	28729079-28821541	protein_coding
	ENSDART00000149496 (cyp2r1-003)	28581208-28786596	processed_transcript
ENSDARG00000056590 (calca) calcitonin/calcitonin-related polypeptide, alpha	ENSDART00000079112 (calca-001)	28806424-28811889	protein_coding
	ENSDART00000100989 (calca-002)	28809102-28811889	protein_coding

CIL_000419_0002 (Click to Hide/Show)

Source ID	Type	Tax ID	Position
ENSG00000186104-ENSG00000175868	CGP	9606	11:14877440-15082342
Gene	Transcript	Position	Biotype
ENSG00000110680 (CALCA) calcitonin-related polypeptide alpha	ENST00000331587 (CALCA-001)	14968501-14972354	protein_coding
	ENST00000361010 (CALCA-201)	14966669-14972286	protein_coding
	ENST00000396372 (CALCA-003)	14968706-14972273	protein_coding
	ENST00000469608 (CALCA-002)	14967040-14972272	nonsense_mediated_decay
	ENST00000486207 (CALCA-004)	14966668-14971201	protein_coding
	ENST00000494746 (CALCA-005)	14966671-14970016	retained_intron
ENSG00000175868 (CALCB) calcitonin-related polypeptide beta	ENST00000324229 (CALCB-002)	15073562-15078632	protein_coding
	ENST00000523376 (CALCB-001)	14904997-15078636	protein_coding
	ENST00000533448 (CALCB-003)	15073562-15082342	protein_coding
ENSG00000186104 (CYP2R1) cytochrome P450, family 2, subfamily R, polypeptide 1	ENST00000334636 (CYP2R1-001)	14877440-14892252	protein_coding
	ENST00000525015 (CYP2R1-006)	14878012-14885841	nonsense_mediated_decay
	ENST00000526276 (CYP2R1-008)	14880315-14891492	processed_transcript
	ENST00000526489 (CYP2R1-009)	14880135-14890531	processed_transcript
	ENST00000529043 (CYP2R1-007)	14880634-14891530	processed_transcript
	ENST00000530609 (CYP2R1-004)	14878009-14891640	nonsense_mediated_decay
	ENST00000532378 (CYP2R1-003)	14878038-14891651	protein_coding
	ENST00000532641 (CYP2R1-010)	14880337-14885977	processed_transcript
	ENST00000532805 (CYP2R1-005)	14878007-14887334	nonsense_mediated_decay
	ENST00000534686 (CYP2R1-002)	14878009-14891662	nonsense_mediated_decay
ENSG00000250640 (OR7E41P) olfactory receptor, family 7, subfamily E, member 41 pseudogene	ENST00000515189 (OR7E41P-001)	14987671-14988694	unprocessed_pseudogene
ENSG00000253179 (CALCP) calcitonin pseudogene	ENST00000522108 (CALCP-001)	14907518-14907986	unprocessed_pseudogene

Expression Patterns

Heat Map

Heat Map (Expressed Only)

Numeric Values

Gene

Transcript

Adipose

Adrenal

Bladder

Brain

Breast

Colon

Heart

Kidney

Liver

Lung

Muscle

Ovary

Placenta

Testis

ENSDARG00000056587

ENSDART00000079091

N/A

0.388±0.32

N/A

0.757±0.05

1.606±1.22

9.838±0.00

N/A

1.005±0.00

N/A

ENSDART00000148417

N/A

ENSDART00000148782

N/A

0.440±0.00

N/A

0.583±0.00

N/A

ENSDART00000149496

N/A

ENSDARG00000056590

ENSDART00000079112

N/A

15.031±5.74

N/A

0.180±0.00

0.073±0.00

N/A

0.601±0.00

N/A

ENSDART00000100989

N/A

0.182±0.00

0.332±0.00

5.164±0.00

N/A

0.214±0.00

N/A

Gene

Transcript

Adipose

Adrenal

Bladder

Brain

Breast

Colon

Heart

Kidney

Liver

Lung

Muscle

Ovary

Placenta

Testis

ENSG00000110680

ENST00000331587

0.071±0.00

0.025±0.00

0.910±0.00

N/A

4.897±0.00

4.902±0.00

N/A

0.031±0.00

N/A

ENST00000361010

N/A

ENST00000396372

N/A

2.901±0.00

0.374±0.00

N/A

0.067±0.03

ENST00000469608

N/A

0.092±0.00

N/A

ENST00000486207

0.034±0.00

N/A

0.018±0.00

N/A

2.882±0.00

N/A

0.015±0.00

N/A

ENST00000494746

N/A

0.032±0.00

N/A

0.065±0.00

ENSG00000175868

ENST00000324229

N/A

0.027±0.01

N/A

0.534±0.49

N/A

0.302±0.00

N/A

0.037±0.00

N/A

0.128±0.00

ENST00000523376

0.007±0.00

N/A

0.073±0.00

N/A

0.053±0.05

N/A

0.033±0.00

N/A

0.082±0.02

ENST00000533448

N/A

0.014±0.00

N/A

0.004±0.00

N/A

0.009±0.00

N/A

0.013±0.00

ENSG00000186104

ENST00000334636

N/A

0.913±0.00

0.173±0.00

N/A

0.191±0.00

N/A

0.363±0.00

N/A

ENST00000525015

2.396±0.00

N/A

2.525±0.00

N/A

2.252±0.00

2.416±0.00

1.381±0.00

N/A

3.430±0.39

1.141±0.00

9.252±0.00

ENST00000526276

N/A

ENST00000526489

N/A

0.670±0.00

1.119±0.00

1.005±0.00

N/A

1.290±0.00

N/A

1.065±0.00

0.332±0.00

1.647±0.00

0.522±0.00

3.250±0.00

ENST00000529043

N/A

2.360±0.00

N/A

ENST00000530609

N/A

1.733±0.00

N/A

0.581±0.00

0.853±0.00

0.273±0.00

N/A

0.502±0.00

N/A

1.234±0.00

0.688±0.19

3.940±0.51

ENST00000532378

0.883±0.00

2.132±0.00

N/A

0.426±0.00

1.109±0.00

0.447±0.00

0.792±0.00

1.115±0.00

0.424±0.03

0.733±0.00

0.527±0.00

2.039±1.03

0.673±0.45

4.206±1.69

ENST00000532641

N/A

1.205±0.00

N/A

0.406±0.00

2.263±0.00

N/A

ENST00000532805

N/A

0.910±0.00

0.878±0.00

0.613±0.00

N/A

0.159±0.00

0.384±0.00

0.346±0.14

1.364±0.00

N/A

ENST00000534686

0.555±0.00

N/A

0.593±0.00

N/A

0.528±0.00

0.392±0.00

0.835±0.00

N/A

0.507±0.00

1.053±0.10

0.232±0.00

2.314±0.00

ENSG00000250640

ENST00000515189

N/A

0.027±0.00

0.109±0.00

N/A

0.069±0.00

N/A

0.049±0.02

ENSG00000253179

ENST00000522108

0.257±0.00

N/A

1.453±0.00

Warning (512): _cake_core_ cache was unable to write 'file_map' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'file_map'
$value = array(
	'Configure' => '/var/www/c-it-loci/lib/Cake/Core/Configure.php',
	'Hash' => '/var/www/c-it-loci/lib/Cake/Utility/Hash.php',
	'Cache' => '/var/www/c-it-loci/lib/Cake/Cache/Cache.php',
	'FileEngine' => '/var/www/c-it-loci/lib/Cake/Cache/Engine/FileEngine.php',
	'CacheEngine' => '/var/www/c-it-loci/lib/Cake/Cache/CacheEngine.php',
	'Inflector' => '/var/www/c-it-loci/lib/Cake/Utility/Inflector.php',
	'ErrorHandler' => '/var/www/c-it-loci/lib/Cake/Error/ErrorHandler.php',
	'CakePlugin' => '/var/www/c-it-loci/lib/Cake/Core/CakePlugin.php',
	'CakeLog' => '/var/www/c-it-loci/lib/Cake/Log/CakeLog.php',
	'LogEngineCollection' => '/var/www/c-it-loci/lib/Cake/Log/LogEngineCollection.php',
	'ObjectCollection' => '/var/www/c-it-loci/lib/Cake/Utility/ObjectCollection.php',
	'FileLog' => '/var/www/c-it-loci/lib/Cake/Log/Engine/FileLog.php',
	'BaseLog' => '/var/www/c-it-loci/lib/Cake/Log/Engine/BaseLog.php',
	'CakeLogInterface' => '/var/www/c-it-loci/lib/Cake/Log/CakeLogInterface.php',
	'Debugger' => '/var/www/c-it-loci/lib/Cake/Utility/Debugger.php',
	'String' => '/var/www/c-it-loci/lib/Cake/Utility/String.php',
	'Dispatcher' => '/var/www/c-it-loci/lib/Cake/Routing/Dispatcher.php',
	'CakeEventListener' => '/var/www/c-it-loci/lib/Cake/Event/CakeEventListener.php',
	'CakeRequest' => '/var/www/c-it-loci/lib/Cake/Network/CakeRequest.php',
	'CakeResponse' => '/var/www/c-it-loci/lib/Cake/Network/CakeResponse.php',
	'CakeEvent' => '/var/www/c-it-loci/lib/Cake/Event/CakeEvent.php',
	'CakeEventManager' => '/var/www/c-it-loci/lib/Cake/Event/CakeEventManager.php',
	'AssetDispatcher' => '/var/www/c-it-loci/lib/Cake/Routing/Filter/AssetDispatcher.php',
	'DispatcherFilter' => '/var/www/c-it-loci/lib/Cake/Routing/DispatcherFilter.php',
	'CacheDispatcher' => '/var/www/c-it-loci/lib/Cake/Routing/Filter/CacheDispatcher.php',
	'Router' => '/var/www/c-it-loci/lib/Cake/Routing/Router.php',
	'CakeRoute' => '/var/www/c-it-loci/lib/Cake/Routing/Route/CakeRoute.php',
	'PluginShortRoute' => '/var/www/c-it-loci/lib/Cake/Routing/Route/PluginShortRoute.php',
	'RegionController' => '/var/www/c-it-loci/app/Controller/RegionController.php',
	'AppController' => '/var/www/c-it-loci/app/Controller/AppController.php',
	'Controller' => '/var/www/c-it-loci/lib/Cake/Controller/Controller.php',
	'Object' => '/var/www/c-it-loci/lib/Cake/Core/Object.php',
	'ComponentCollection' => '/var/www/c-it-loci/lib/Cake/Controller/ComponentCollection.php',
	'SessionComponent' => '/var/www/c-it-loci/lib/Cake/Controller/Component/SessionComponent.php',
	'Component' => '/var/www/c-it-loci/lib/Cake/Controller/Component.php',
	'RequestHandlerComponent' => '/var/www/c-it-loci/lib/Cake/Controller/Component/RequestHandlerComponent.php',
	'ClassRegistry' => '/var/www/c-it-loci/lib/Cake/Utility/ClassRegistry.php',
	'Region' => '/var/www/c-it-loci/app/Model/Region.php',
	'AppModel' => '/var/www/c-it-loci/app/Model/AppModel.php',
	'Model' => '/var/www/c-it-loci/lib/Cake/Model/Model.php',
	'BehaviorCollection' => '/var/www/c-it-loci/lib/Cake/Model/BehaviorCollection.php',
	'ConnectionManager' => '/var/www/c-it-loci/lib/Cake/Model/ConnectionManager.php',
	'Mysql' => '/var/www/c-it-loci/lib/Cake/Model/Datasource/Database/Mysql.php',
	'DboSource' => '/var/www/c-it-loci/lib/Cake/Model/Datasource/DboSource.php',
	'DataSource' => '/var/www/c-it-loci/lib/Cake/Model/Datasource/DataSource.php',
	'I18n' => '/var/www/c-it-loci/lib/Cake/I18n/I18n.php',
	'L10n' => '/var/www/c-it-loci/lib/Cake/I18n/L10n.php',
	'CakeSession' => '/var/www/c-it-loci/lib/Cake/Model/Datasource/CakeSession.php',
	'View' => '/var/www/c-it-loci/lib/Cake/View/View.php',
	'HelperCollection' => '/var/www/c-it-loci/lib/Cake/View/HelperCollection.php',
	'ViewBlock' => '/var/www/c-it-loci/lib/Cake/View/ViewBlock.php',
	'HtmlHelper' => '/var/www/c-it-loci/lib/Cake/View/Helper/HtmlHelper.php',
	'AppHelper' => '/var/www/c-it-loci/app/View/Helper/AppHelper.php',
	'Helper' => '/var/www/c-it-loci/lib/Cake/View/Helper.php',
	'FormHelper' => '/var/www/c-it-loci/lib/Cake/View/Helper/FormHelper.php',
	'SessionHelper' => '/var/www/c-it-loci/lib/Cake/View/Helper/SessionHelper.php'
)
$config = '_cake_core_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/persistent/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
App::shutdown() - CORE/Cake/Core/App.php, line 899
[main] - [internal], line ??

Warning (512): _cake_core_ cache was unable to write 'method_cache' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'method_cache'
$value = array(
	(int) 0 => false,
	'name' => array(
		'45b989c52610ac6d773f6b83d6108190' => '`citloci`'
	)
)
$config = '_cake_core_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/persistent/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
DboSource::__destruct() - CORE/Cake/Model/Datasource/DboSource.php, line 3539
[main] - [internal], line ??

C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

Expression Patterns

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