C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00043L_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000166407-ENSG00000130413 CGP 9606 11:8224304-8594289
GeneTranscriptPositionBiotype
ENSG00000166407 (LMO1)
LIM domain only 1 (rhombotin 1) 		ENST00000335790 (LMO1-001) 8224304-8263858 protein_coding
ENST00000428101 (LMO1-003) 8224314-8268716 protein_coding
ENST00000524379 (LMO1-002) 8224449-8263388 retained_intron
ENST00000534484 (LMO1-004) 8224479-8263858 protein_coding

Homo sapiens Ensembl (GRCh38)

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CIL_00043L_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000036111-ENSMUSG00000031027 CGP 10090 7:109138572-109439081
GeneTranscriptPositionBiotype
ENSMUSG00000031027 (Stk33)
serine/threonine kinase 33 		ENSMUST00000090414 (Stk33-002) 109279223-109439081 protein_coding
ENSMUST00000106745 (Stk33-001) 109279223-109439076 protein_coding
ENSMUST00000121378 (Stk33-005) 109279595-109438998 protein_coding
ENSMUST00000121748 (Stk33-003) 109279223-109438817 protein_coding
ENSMUST00000141210 (Stk33-004) 109279223-109439081 processed_transcript
ENSMUSG00000036111 (Lmo1)
LIM domain only 1 		ENSMUST00000036992 (Lmo1-201) 109138572-109170308 protein_coding
ENSMUSG00000081370 (Gm9105)
predicted gene 9105 		ENSMUST00000120160 (Gm9105-001) 109387478-109388875 processed_pseudogene
ENSMUSG00000085407 (1700095J03Rik)
RIKEN cDNA 1700095J03 gene 		ENSMUST00000143715 (1700095J03Rik-001) 109438618-109444893 processed_transcript

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00043L_0001ENSG00000166407ENST00000335790ENST00000428101ENST00000524379ENST00000534484CIL_00043L_0002ENSMUSG00000031027ENSMUST00000090414ENSMUST00000106745ENSMUST00000121378ENSMUST00000121748ENSMUST00000141210ENSMUSG00000036111ENSMUST00000036992ENSMUSG00000081370ENSMUST00000120160ENSMUSG00000085407ENSMUST00000143715
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00043L_0001ENSG00000166407ENST00000335790ENST00000428101ENST00000524379ENST00000534484CIL_00043L_0002ENSMUSG00000031027ENSMUST00000090414ENSMUST00000106745ENSMUST00000121378ENSMUST00000121748ENSMUST00000141210ENSMUSG00000036111ENSMUST00000036992ENSMUSG00000081370ENSMUST00000120160ENSMUSG00000085407ENSMUST00000143715
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000166407 ENST00000335790 N/A N/A 0.120±0.00 0.170±0.10 N/A N/A N/A 0.094±0.00 0.062±0.00 N/A 1.685±0.00 N/A 0.119±0.00 0.170±0.00
ENST00000428101 N/A N/A N/A 0.946±0.00 0.153±0.00 N/A 0.297±0.08 0.178±0.00 N/A N/A 1.106±0.80 N/A 0.216±0.00 0.960±0.06
ENST00000524379 N/A N/A N/A N/A 0.114±0.00 0.506±0.44 N/A N/A N/A N/A N/A N/A 0.201±0.00 0.333±0.00
ENST00000534484 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.300±0.00 0.232±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000031027 ENSMUST00000090414 0.136±0.00 N/A N/A 0.681±0.12 N/A N/A 0.048±0.02 N/A N/A 0.414±0.18 0.020±0.00 0.242±0.15 0.299±0.12 51.581±44.18
ENSMUST00000106745 N/A 0.077±0.01 N/A N/A N/A N/A N/A N/A N/A 0.373±0.09 N/A N/A 0.056±0.00 N/A
ENSMUST00000121378 N/A 0.172±0.00 0.131±0.02 1.139±0.63 N/A 0.083±0.00 N/A N/A 0.008±0.00 N/A N/A 0.344±0.15 0.213±0.14 N/A
ENSMUST00000121748 N/A 0.085±0.00 N/A N/A 0.021±0.00 N/A N/A 0.055±0.02 N/A 0.781±0.16 N/A 0.137±0.02 0.095±0.03 32.190±3.77
ENSMUST00000141210 0.079±0.04 N/A 0.067±0.01 0.721±0.59 0.055±0.00 N/A N/A 0.052±0.01 0.017±0.01 0.482±0.09 0.028±0.00 0.246±0.07 0.300±0.00 N/A
ENSMUSG00000036111 ENSMUST00000036992 4.343±2.82 3.363±0.53 52.668±2.65 22.366±15.55 2.299±0.77 0.348±0.15 1.454±0.92 0.901±0.23 0.110±0.05 0.414±0.05 0.783±0.87 1.761±0.70 0.255±0.21 1.360±0.67
ENSMUSG00000081370 ENSMUST00000120160 0.065±0.04 N/A 0.005±0.00 0.093±0.01 0.078±0.03 N/A 0.024±0.00 N/A N/A 0.096±0.00 N/A 0.189±0.00 0.003±0.00 0.196±0.08
ENSMUSG00000085407 ENSMUST00000143715 0.144±0.12 0.125±0.06 0.072±0.00 1.245±0.04 0.074±0.06 0.038±0.01 0.039±0.02 0.030±0.01 0.008±0.00 0.755±0.13 N/A 0.304±0.15 0.181±0.10 29.773±2.71

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