C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LIM domain only 1 (rhombotin 1)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000335790 LMO1-001 ENSG00000166407 9606 - 11:8224304-8263858 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainKidneyLiverMusclePlacentaTestisENST00000335790
Transcript ID Bladder Brain Kidney Liver Muscle Placenta Testis
ENST00000335790 0.120±0.00 0.170±0.10 0.094±0.00 0.062±0.00 1.685±0.00 0.119±0.00 0.170±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009BA CIL_0009BA_0001 VISTA 11:7904499-8509136
CIL_0008M3 CIL_0008M3_0001 VISTA 11:7953590-8554788
CIL_0009BB CIL_0009BB_0001 VISTA 11:7996158-8596683
CIL_00043B CIL_00043B_0001 CGP 11:8106093-8268716
CIL_0007LP CIL_0007LP_0001 UCNEbase 11:8177826-8296591
CIL_00043L CIL_00043L_0001 CGP 11:8224304-8594289

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0005515 IEA protein binding
GO:0005634 ISS nucleus
GO:0008270 IEA zinc ion binding
GO:0045944 IMP positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000036992 Lmo1-201 protein_coding Mus_musculus 0 1478
ENSDART00000044208 lmo1-201 protein_coding Danio_rerio 0 483
ENSDART00000112860 lmo3-003 protein_coding Danio_rerio 0 370
ENSDART00000003583 lmo3-001 protein_coding Danio_rerio 0 370
ENSDART00000139655 lmo1-001 protein_coding Danio_rerio 0 278
ENSDART00000134362 lmo3-002 protein_coding Danio_rerio 0 220
ENSDART00000133767 lmo3-004 protein_coding Danio_rerio 4e-28 130

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