C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LIM domain only 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000036992 Lmo1-201 ENSMUSG00000036111 10090 - 7:109138572-109170308 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000036992
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000036992 4.343±2.82 3.363±0.53 52.668±2.65 22.366±15.55 2.299±0.77 0.348±0.15 1.454±0.92 0.901±0.23 0.110±0.05 0.414±0.05 0.783±0.87 1.761±0.70 0.255±0.21 1.360±0.67

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009BA CIL_0009BA_0002 VISTA 7:108813133-109417303
CIL_0008M3 CIL_0008M3_0002 VISTA 7:108861322-109462713
CIL_0009BB CIL_0009BB_0002 VISTA 7:108902812-109503341
CIL_00043B CIL_00043B_0002 CGP 7:109034312-109170308
CIL_0007LP CIL_0007LP_0002 UCNEbase 7:109090435-109203250
CIL_00043L CIL_00043L_0002 CGP 7:109138572-109439081

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IGI negative regulation of transcription from RNA polymerase II promoter
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0008270 IEA zinc ion binding
GO:0045944 IGI positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000335790 LMO1-001 protein_coding Homo_sapiens 0 1478
ENST00000428101 LMO1-003 protein_coding Homo_sapiens 0 1024
ENST00000524379 LMO1-002 retained_intron Homo_sapiens 0 575
ENST00000534484 LMO1-004 protein_coding Homo_sapiens 0 765

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