C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: LIM domain only 1 (rhombotin 1)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000166407 LMO1 9606 - 11:8224304-8268716 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000335790 LMO1-001 8224304-8263858 protein_coding
  ENST00000428101 LMO1-003 8224314-8268716 protein_coding
  ENST00000524379 LMO1-002 8224449-8263388 retained_intron
  ENST00000534484 LMO1-004 8224479-8263858 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverMusclePlacentaTestisENST00000335790ENST00000428101ENST00000524379ENST00000534484
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Muscle Placenta Testis
ENST00000335790 0.120±0.00 0.170±0.10 N/A N/A N/A 0.094±0.00 0.062±0.00 1.685±0.00 0.119±0.00 0.170±0.00
ENST00000428101 N/A 0.946±0.00 0.153±0.00 N/A 0.297±0.08 0.178±0.00 N/A 1.106±0.80 0.216±0.00 0.960±0.06
ENST00000524379 N/A N/A 0.114±0.00 0.506±0.44 N/A N/A N/A N/A 0.201±0.00 0.333±0.00
ENST00000534484 N/A N/A N/A N/A N/A N/A N/A N/A 0.300±0.00 0.232±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009BA CIL_0009BA_0001 VISTA 11:7904499-8509136
CIL_0008M3 CIL_0008M3_0001 VISTA 11:7953590-8554788
CIL_0009BB CIL_0009BB_0001 VISTA 11:7996158-8596683
CIL_00043B CIL_00043B_0001 CGP 11:8106093-8268716
CIL_0007LP CIL_0007LP_0001 UCNEbase 11:8177826-8296591
CIL_00043L CIL_00043L_0001 CGP 11:8224304-8594289

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0005515 IEA protein binding
GO:0005634 ISS nucleus
GO:0008270 IEA zinc ion binding
GO:0045944 IMP positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000034504 lmo1 LIM domain only 1 protein_coding Danio_rerio
ENSMUSG00000036111 Lmo1 LIM domain only 1 protein_coding Mus_musculus

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