C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004MH_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000122035-ENSG00000122034 CGP 9606 13:27270327-27435823
GeneTranscriptPositionBiotype
ENSG00000122034 (GTF3A)
general transcription factor IIIA 		ENST00000381140 (GTF3A-001) 27424544-27435688 protein_coding
ENST00000419181 (GTF3A-002) 27424662-27435688 nonsense_mediated_decay
ENST00000435781 (GTF3A-004) 27424638-27434169 nonsense_mediated_decay
ENST00000438571 (GTF3A-005) 27424676-27432745 nonsense_mediated_decay
ENST00000439403 (GTF3A-201) 27424544-27435686 protein_coding
ENST00000466776 (GTF3A-006) 27424766-27434150 processed_transcript
ENST00000470606 (GTF3A-003) 27425411-27435688 processed_transcript
ENST00000482655 (GTF3A-009) 27434657-27435823 retained_intron
ENST00000493903 (GTF3A-008) 27429213-27435034 processed_transcript
ENSG00000122035 (RASL11A)
RAS-like, family 11, member A 		ENST00000241463 (RASL11A-001) 27270327-27273690 protein_coding
ENST00000475647 (RASL11A-002) 27271177-27273276 processed_transcript
ENST00000480803 (RASL11A-003) 27271586-27273400 processed_transcript
ENSG00000201242 (RNY1P1)
RNA, Ro-associated Y1 pseudogene 1 		ENST00000364372 (RNY1P1-201) 27402476-27402587 misc_RNA
ENSG00000229609 (LINC01079)
long intergenic non-protein coding RNA 1079 		ENST00000431171 (LINC01079-001) 27373348-27374366 lincRNA
CIL_0004MH_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000029641-ENSMUSG00000016503 CGP 10090 5:146845071-146955614
GeneTranscriptPositionBiotype
ENSMUSG00000016510 (Mtif3)
mitochondrial translational initiation factor 3 		ENSMUST00000016654 (Mtif3-001) 146954520-146963787 protein_coding
ENSMUST00000066675 (Mtif3-002) 146951573-146963785 protein_coding
ENSMUST00000110564 (Mtif3-004) 146955367-146963749 protein_coding
ENSMUST00000110566 (Mtif3-003) 146955367-146963797 protein_coding
ENSMUST00000125217 (Mtif3-006) 146958937-146963743 protein_coding
ENSMUST00000140526 (Mtif3-005) 146958948-146963800 protein_coding
ENSMUSG00000029641 (Rasl11a)
RAS-like, family 11, member A 		ENSMUST00000031646 (Rasl11a-201) 146845071-146847726 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004MH_0001ENSG00000122034ENST00000381140ENST00000419181ENST00000435781ENST00000438571ENST00000439403ENST00000466776ENST00000470606ENST00000482655ENST00000493903ENSG00000122035ENST00000241463ENST00000475647ENST00000480803ENSG00000201242ENST00000364372ENSG00000229609ENST00000431171CIL_0004MH_0002ENSMUSG00000016510ENSMUST00000016654ENSMUST00000066675ENSMUST00000110564ENSMUST00000110566ENSMUST00000125217ENSMUST00000140526ENSMUSG00000029641ENSMUST00000031646
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004MH_0001ENSG00000122034ENST00000381140ENST00000419181ENST00000439403ENST00000466776ENSG00000122035ENST00000241463ENST00000475647ENST00000480803ENSG00000201242ENST00000364372ENSG00000229609ENST00000431171CIL_0004MH_0002ENSMUSG00000016510ENSMUST00000016654ENSMUST00000066675ENSMUST00000110566ENSMUSG00000029641ENSMUST00000031646
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000122034 ENST00000381140 N/A N/A N/A N/A N/A N/A 3.873±0.00 N/A 3.324±0.00 N/A 7.950±0.00 23.694±6.70 27.980±0.00 N/A
ENST00000419181 N/A N/A N/A N/A N/A N/A N/A N/A 2.777±0.00 11.636±0.00 27.793±0.00 N/A 9.292±0.00 20.524±0.00
ENST00000435781 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000438571 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000439403 48.243±0.00 97.436±0.00 1.414±0.00 23.544±11.89 43.829±36.05 25.894±21.43 39.133±33.46 29.792±14.64 67.188±0.00 21.619±17.25 54.397±0.00 89.422±71.36 21.068±6.00 72.289±0.00
ENST00000466776 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 268.332±0.00 40.452±0.00 N/A
ENST00000470606 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482655 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493903 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000122035 ENST00000241463 12.996±0.00 13.197±0.00 2.345±0.00 1.117±0.64 4.013±2.10 9.107±0.00 1.566±1.34 8.551±7.90 2.630±0.54 3.556±2.68 0.846±0.48 8.788±6.82 5.123±3.19 2.229±1.03
ENST00000475647 9.856±0.00 N/A N/A N/A N/A 7.895±0.00 0.790±0.00 N/A N/A N/A N/A N/A N/A 1.838±0.00
ENST00000480803 N/A 11.684±0.00 N/A N/A 2.867±1.53 3.447±0.00 0.555±0.35 9.838±0.00 1.686±0.00 4.587±2.88 1.171±0.00 4.206±0.00 1.522±0.00 1.479±0.00
ENSG00000201242 ENST00000364372 N/A N/A N/A 0.291±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000229609 ENST00000431171 N/A N/A N/A N/A 0.196±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.072±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000016510 ENSMUST00000016654 5.610±0.25 N/A 4.818±0.52 4.103±1.44 7.834±3.26 13.928±2.60 3.880±0.95 11.860±0.98 6.323±0.96 6.331±1.48 2.527±0.42 9.416±3.37 3.864±0.60 4.159±0.41
ENSMUST00000066675 1.186±0.20 N/A 1.178±0.05 1.398±0.00 0.869±0.02 2.248±0.00 0.801±0.22 2.128±0.12 1.100±0.17 0.977±0.01 1.075±0.21 1.987±0.00 1.378±0.36 0.417±0.09
ENSMUST00000110564 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000110566 N/A N/A 4.104±0.00 14.693±0.00 N/A N/A 2.660±0.13 N/A 4.484±0.46 N/A 4.739±0.94 16.084±10.16 14.366±8.33 7.926±8.24
ENSMUST00000125217 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140526 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000029641 ENSMUST00000031646 4.303±1.07 4.380±0.73 8.877±2.58 2.147±0.36 2.880±0.92 3.215±0.57 0.930±0.31 8.636±0.59 0.632±0.36 10.665±2.17 0.770±0.28 10.971±3.14 8.819±9.70 0.462±0.22

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