C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: general transcription factor IIIA
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000381140 GTF3A-001 ENSG00000122034 9606 + 13:27424544-27435688 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartLiverMuscleOvaryPlacentaENST00000381140
Transcript ID Heart Liver Muscle Ovary Placenta
ENST00000381140 3.873±0.00 3.324±0.00 7.950±0.00 23.694±6.70 27.980±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004MH CIL_0004MH_0001 CGP 13:27270327-27435823
CIL_0000G7 CIL_0000G7_0002 CGP 13:27424544-27450591

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003723 IEA RNA binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006383 TAS transcription from RNA polymerase III promoter
GO:0009303 TAS rRNA transcription
GO:0010467 TAS gene expression
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000146511 Gtf3a-001 protein_coding Mus_musculus 0 863
ENSMUST00000133682 Gtf3a-002 retained_intron Mus_musculus 0 603
ENSMUST00000132102 Gtf3a-003 protein_coding Mus_musculus 0 832
ENSMUST00000133296 Gtf3a-004 retained_intron Mus_musculus 0 662

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