C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: general transcription factor IIIA
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000122034 GTF3A 9606 + 13:27424544-27435823 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000381140 GTF3A-001 27424544-27435688 protein_coding
  ENST00000419181 GTF3A-002 27424662-27435688 nonsense_mediated_decay
  ENST00000435781 GTF3A-004 27424638-27434169 nonsense_mediated_decay
  ENST00000438571 GTF3A-005 27424676-27432745 nonsense_mediated_decay
  ENST00000439403 GTF3A-201 27424544-27435686 protein_coding
  ENST00000466776 GTF3A-006 27424766-27434150 processed_transcript
  ENST00000470606 GTF3A-003 27425411-27435688 processed_transcript
  ENST00000482655 GTF3A-009 27434657-27435823 retained_intron
  ENST00000493903 GTF3A-008 27429213-27435034 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000381140ENST00000419181ENST00000439403ENST00000466776
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000381140 N/A N/A N/A N/A N/A N/A 3.873±0.00 N/A 3.324±0.00 N/A 7.950±0.00 23.694±6.70 27.980±0.00 N/A
ENST00000419181 N/A N/A N/A N/A N/A N/A N/A N/A 2.777±0.00 11.636±0.00 27.793±0.00 N/A 9.292±0.00 20.524±0.00
ENST00000439403 48.243±0.00 97.436±0.00 1.414±0.00 23.544±11.89 43.829±36.05 25.894±21.43 39.133±33.46 29.792±14.64 67.188±0.00 21.619±17.25 54.397±0.00 89.422±71.36 21.068±6.00 72.289±0.00
ENST00000466776 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 268.332±0.00 40.452±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004MH CIL_0004MH_0001 CGP 13:27270327-27435823
CIL_0000G7 CIL_0000G7_0002 CGP 13:27424544-27450591

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0003723 IEA RNA binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006383 TAS transcription from RNA polymerase III promoter
GO:0009303 TAS rRNA transcription
GO:0010467 TAS gene expression
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000030267 gtf3aa general transcription factor IIIAa protein_coding Danio_rerio
ENSDARG00000071583 gtf3ab general transcription factor IIIA, b protein_coding Danio_rerio
ENSMUSG00000016503 Gtf3a general transcription factor III A protein_coding Mus_musculus

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