C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Rho GTPase activating protein 40
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000373345 ARHGAP40-201 ENSG00000124143 9606 + 20:38601934-38650652 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainLiverOvaryPlacentaENST00000373345
Transcript ID Brain Liver Ovary Placenta
ENST00000373345 0.041±0.00 0.245±0.00 0.017±0.00 0.061±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00081Y CIL_00081Y_0001 VISTA 20:38219747-38821106
CIL_0004O3 CIL_0004O3_0001 CGP 20:38581195-38651035
CIL_0004NT CIL_0004NT_0001 CGP 20:38601934-38729372

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005096 IEA GTPase activator activity
GO:0005622 IEA intracellular
GO:0005829 TAS cytosol
GO:0007165 IEA signal transduction
GO:0007264 TAS small GTPase mediated signal transduction
GO:0043547 IEA positive regulation of GTPase activity
GO:0051056 TAS regulation of small GTPase mediated signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000165398 Arhgap40-201 protein_coding Mus_musculus 0 1482
ENSMUST00000099133 Arhgap40-001 protein_coding Mus_musculus 0 1482

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