C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: GINS complex subunit 3 (Psf3 homolog)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000034094 Gins3-201 ENSMUSG00000031669 10090 + 8:95633559-95645059 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000034094
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000034094 0.942±0.40 0.716±0.23 1.424±0.30 1.422±0.28 0.688±0.30 0.647±0.12 0.327±0.07 0.460±0.08 1.498±1.60 0.598±0.13 0.339±0.08 1.223±0.42 2.663±0.94 0.791±0.29

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008Z0 CIL_0008Z0_0002 VISTA 8:95126508-95728314
CIL_0004RU CIL_0004RU_0002 CGP 8:95559133-95645059
CIL_0004IX CIL_0004IX_0002 CGP 8:95633559-95715119

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005634 IEA nucleus
GO:0006260 IEA DNA replication

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000272274 RPL21-003 protein_coding Homo_sapiens 0 337
ENST00000311549 RPL21-001 protein_coding Homo_sapiens 0 353
ENST00000318129 GINS3-001 protein_coding Homo_sapiens 0 743
ENST00000319826 RPL21-004 protein_coding Homo_sapiens 0 337
ENST00000326092 RPL21-005 protein_coding Homo_sapiens 0 337
ENST00000396599 RPL21P75-001 processed_pseudogene Homo_sapiens 0 329
ENST00000397467 RPL21P17-001 processed_pseudogene Homo_sapiens 0 255
ENST00000401418 RPL21P28-001 processed_pseudogene Homo_sapiens 0 329
ENST00000402485 RP11-254A17.1-001 processed_pseudogene Homo_sapiens 0 195
ENST00000416622 RP11-329A14.2-001 processed_pseudogene Homo_sapiens 0 196
ENST00000426538 GINS3-003 protein_coding Homo_sapiens 0 566
ENST00000432935 RP5-1068B5.1-001 processed_pseudogene Homo_sapiens 0.000000003 66
ENST00000440049 RPL21P2-001 processed_pseudogene Homo_sapiens 0 261
ENST00000441274 RP11-490K7.1-001 processed_pseudogene Homo_sapiens 1.99965e-42 176
ENST00000460608 CTD-2301A4.3-001 processed_pseudogene Homo_sapiens 0 230
ENST00000461458 RPL21P11-001 processed_pseudogene Homo_sapiens 0 296
ENST00000461690 RPL21-007 nonsense_mediated_decay Homo_sapiens 0 337
ENST00000465295 RP11-30K9.1-001 processed_pseudogene Homo_sapiens 0 241
ENST00000466550 RPL21-006 retained_intron Homo_sapiens 0 206
ENST00000469899 RPL21P18-001 processed_pseudogene Homo_sapiens 0 243
ENST00000472300 RP11-16F15.2-001 processed_pseudogene Homo_sapiens 0 318
ENST00000473558 RPL21-002 retained_intron Homo_sapiens 3e-31 139
ENST00000480465 RP11-492M23.2-001 processed_pseudogene Homo_sapiens 0 320
ENST00000484462 RPL21P119-001 processed_pseudogene Homo_sapiens 0 326
ENST00000485945 RP11-613M5.2-001 processed_pseudogene Homo_sapiens 0 311
ENST00000486753 RP11-48B14.1-001 processed_pseudogene Homo_sapiens 0 302
ENST00000493317 RPL21-009 protein_coding Homo_sapiens 0 252
ENST00000495531 RP11-572P18.1-001 processed_pseudogene Homo_sapiens 0 335
ENST00000497298 RPL21P131-001 processed_pseudogene Homo_sapiens 0 279
ENST00000567143 GINS3-004 retained_intron Homo_sapiens 0 305

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