C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptotagmin V
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000065957 Syt5-201 ENSMUSG00000004961 10090 - 7:4539768-4546567 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000065957
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000065957 0.103±0.06 1.136±0.17 0.181±0.00 16.821±5.12 0.071±0.02 1.379±0.73 0.137±0.02 0.136±0.07 0.042±0.02 2.052±0.45 0.842±0.24 0.063±0.04 0.399±0.25

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003OX CIL_0003OX_0002 CGP 7:4522933-4546567
CIL_0004TB CIL_0004TB_0002 CGP 7:4539768-4604041

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005215 IEA transporter activity
GO:0005544 IEA calcium-dependent phospholipid binding
GO:0005768 IEA endosome
GO:0005886 TAS plasma membrane
GO:0008021 IEA synaptic vesicle
GO:0016021 IEA integral component of membrane
GO:0017156 IEA calcium ion-dependent exocytosis
GO:0019905 IEA syntaxin binding
GO:0030054 IEA cell junction
GO:0030276 IEA clathrin binding
GO:0031045 IDA dense core granule
GO:0043005 IDA neuron projection
GO:0043025 IDA neuronal cell body
GO:0046872 IEA metal ion binding
GO:0046982 IPI protein heterodimerization activity
GO:0048471 IDA perinuclear region of cytoplasm

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000354308 SYT5-001 protein_coding Homo_sapiens 0 1242
ENST00000537500 SYT5-002 protein_coding Homo_sapiens 0 1247
ENST00000587067 SYT5-010 protein_coding Homo_sapiens 0 363
ENST00000588305 SYT5-008 retained_intron Homo_sapiens 0 843
ENST00000590851 SYT5-003 protein_coding Homo_sapiens 0 939
ENST00000592956 SYT5-009 retained_intron Homo_sapiens 0 584

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