C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004U3_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000039778-ENSDARG00000059269 CGP 7955 13:52105009-52257930
GeneTranscriptPositionBiotype
ENSDARG00000039778 (NEDD4)
neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase 		ENSDART00000058161 (NEDD4-201) 52105009-52207985 protein_coding
ENSDARG00000059269 (PRTG (2 of 3))
protogenin 		ENSDART00000082348 (PRTG (2 of 3)-201) 52216863-52257930 protein_coding
CIL_0004U3_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000032216-ENSMUSG00000036030 CGP 10090 9:72662346-72917291
GeneTranscriptPositionBiotype
ENSMUSG00000032216 (Nedd4)
neural precursor cell expressed, developmentally down-regulated 4 		ENSMUST00000034740 (Nedd4-001) 72662346-72749852 protein_coding
ENSMUST00000183375 (Nedd4-006) 72662487-72712229 protein_coding
ENSMUST00000183451 (Nedd4-008) 72741444-72747153 retained_intron
ENSMUST00000184020 (Nedd4-007) 72739472-72748158 nonsense_mediated_decay
ENSMUST00000184180 (Nedd4-010) 72668669-72672129 retained_intron
ENSMUST00000184287 (Nedd4-009) 72745839-72747263 retained_intron
ENSMUST00000184333 (Nedd4-002) 72668680-72720355 protein_coding
ENSMUST00000184386 (Nedd4-003) 72662490-72663299 processed_transcript
ENSMUST00000184450 (Nedd4-005) 72662482-72720790 protein_coding
ENSMUST00000184737 (Nedd4-004) 72662438-72672148 retained_intron
ENSMUSG00000036030 (Prtg)
protogenin homolog (Gallus gallus) 		ENSMUST00000055535 (Prtg-001) 72806874-72917291 protein_coding
ENSMUST00000184274 (Prtg-002) 72910627-72912305 retained_intron
ENSMUSG00000098294 (Gm27204)
predicted gene 27204 		ENSMUST00000184673 (Gm27204-001) 72774063-72776225 lincRNA
ENSMUSG00000098471 (Gm27203)
predicted gene 27203 		ENSMUST00000183677 (Gm27203-001) 72827257-72827563 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004U3_0001ENSDARG00000039778ENSDART00000058161ENSDARG00000059269ENSDART00000082348CIL_0004U3_0002ENSMUSG00000032216ENSMUST00000034740ENSMUST00000183375ENSMUST00000183451ENSMUST00000184020ENSMUST00000184180ENSMUST00000184287ENSMUST00000184333ENSMUST00000184386ENSMUST00000184450ENSMUST00000184737ENSMUSG00000036030ENSMUST00000055535ENSMUST00000184274ENSMUSG00000098294ENSMUST00000184673ENSMUSG00000098471ENSMUST00000183677
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004U3_0001ENSDARG00000039778ENSDART00000058161ENSDARG00000059269ENSDART00000082348CIL_0004U3_0002ENSMUSG00000032216ENSMUST00000034740ENSMUST00000184020ENSMUST00000184737ENSMUSG00000036030ENSMUST00000055535ENSMUST00000184274ENSMUSG00000098294ENSMUST00000184673ENSMUSG00000098471ENSMUST00000183677
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000039778 ENSDART00000058161 N/A N/A N/A 6.364±2.48 N/A N/A 3.415±0.97 1.136±0.44 1.021±0.00 N/A 4.462±0.00 N/A N/A N/A
ENSDARG00000059269 ENSDART00000082348 N/A N/A N/A 0.048±0.01 N/A N/A 0.047±0.00 0.053±0.00 0.186±0.00 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000032216 ENSMUST00000034740 181.114±30.49 59.365±14.24 149.802±35.64 131.191±33.03 115.933±21.39 54.665±5.58 77.101±6.68 61.688±7.78 49.265±20.59 88.878±9.83 63.537±6.82 174.974±53.95 104.565±13.62 13.525±2.06
ENSMUST00000183375 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000183451 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000184020 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 92.690±0.00 N/A N/A
ENSMUST00000184180 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000184287 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000184333 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000184386 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000184450 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000184737 N/A 174.346±28.63 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000036030 ENSMUST00000055535 0.316±0.19 0.042±0.01 0.072±0.01 0.233±0.07 0.274±0.10 0.030±0.01 0.029±0.01 0.043±0.01 0.040±0.04 0.032±0.01 0.037±0.01 0.188±0.08 0.766±0.40 0.058±0.02
ENSMUST00000184274 N/A 0.385±0.19 N/A N/A N/A 0.213±0.08 0.107±0.04 0.173±0.00 0.136±0.04 N/A 0.152±0.03 0.886±0.11 N/A N/A
ENSMUSG00000098294 ENSMUST00000184673 0.067±0.00 0.232±0.00 N/A N/A 0.111±0.02 N/A N/A N/A 0.014±0.00 N/A N/A N/A 1.232±0.75 N/A
ENSMUSG00000098471 ENSMUST00000183677 0.345±0.00 N/A N/A 0.118±0.08 0.310±0.04 N/A N/A 0.264±0.02 0.119±0.00 N/A N/A 1.066±0.00 N/A N/A

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