C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004XS_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000106410-ENSG00000196511 CGP 9606 7:144397240-144836395
GeneTranscriptPositionBiotype
ENSG00000196511 (TPK1)
thiamin pyrophosphokinase 1 		ENST00000360057 (TPK1-001) 144451941-144836053 protein_coding
ENST00000378098 (TPK1-002) 144452582-144836053 nonsense_mediated_decay
ENST00000378099 (TPK1-201) 144451950-144836053 protein_coding
ENST00000481645 (TPK1-003) 144619181-144739477 retained_intron
ENST00000482940 (TPK1-004) 144451941-144738922 nonsense_mediated_decay
ENST00000489798 (TPK1-006) 144643544-144738924 nonsense_mediated_decay
ENST00000538212 (TPK1-014) 144451943-144724159 protein_coding
ENST00000546806 (TPK1-009) 144681740-144738891 processed_transcript
ENST00000547966 (TPK1-012) 144453428-144666702 processed_transcript
ENST00000548460 (TPK1-008) 144835131-144835999 processed_transcript
ENST00000548831 (TPK1-011) 144591137-144646114 processed_transcript
ENST00000551062 (TPK1-013) 144531110-144666718 processed_transcript
ENST00000552881 (TPK1-007) 144591424-144836395 protein_coding
ENSG00000221507 (RNU6ATAC40P)
RNA, U6atac small nuclear 40, pseudogene 		ENST00000408580 (RNU6ATAC40P-201) 144451681-144451817 snRNA
ENSG00000242978 (RP4-545C24.5)
 ENST00000462678 (RP4-545C24.5-001) 144434826-144435314 processed_pseudogene
ENSG00000243746 (EEF1A1P10)
eukaryotic translation elongation factor 1 alpha 1 pseudogene 10 		ENST00000475365 (EEF1A1P10-001) 144647186-144648575 processed_pseudogene
CIL_0004XS_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000029736-ENSMUSG00000029735 CGP 10090 6:43303674-43666278
GeneTranscriptPositionBiotype
ENSMUSG00000029735 (Tpk1)
thiamine pyrophosphokinase 		ENSMUST00000067888 (Tpk1-001) 43345001-43666278 protein_coding
ENSMUST00000114643 (Tpk1-004) 43593043-43665881 processed_transcript
ENSMUST00000114644 (Tpk1-003) 43345274-43666175 protein_coding
ENSMUST00000149424 (Tpk1-005) 43346842-43476520 processed_transcript
ENSMUST00000150599 (Tpk1-002) 43591591-43666219 protein_coding
ENSMUSG00000029736 (Nobox)
NOBOX oogenesis homeobox 		ENSMUST00000031749 (Nobox-001) 43303674-43309554 protein_coding
ENSMUST00000172554 (Nobox-002) 43303898-43307236 protein_coding
ENSMUST00000183706 (Nobox-003) 43303700-43305135 protein_coding
ENSMUSG00000084325 (Gm15550)
predicted gene 15550 		ENSMUST00000120824 (Gm15550-001) 43373805-43374878 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004XS_0001ENSG00000196511ENST00000360057ENST00000378098ENST00000378099ENST00000481645ENST00000482940ENST00000489798ENST00000538212ENST00000546806ENST00000547966ENST00000548460ENST00000548831ENST00000551062ENST00000552881ENSG00000221507ENST00000408580ENSG00000242978ENST00000462678ENSG00000243746ENST00000475365CIL_0004XS_0002ENSMUSG00000029735ENSMUST00000067888ENSMUST00000114643ENSMUST00000114644ENSMUST00000149424ENSMUST00000150599ENSMUSG00000029736ENSMUST00000031749ENSMUST00000172554ENSMUST00000183706ENSMUSG00000084325ENSMUST00000120824
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004XS_0001ENSG00000196511ENST00000360057ENST00000378098ENST00000378099ENST00000481645ENST00000482940ENST00000538212ENST00000547966ENST00000548460ENST00000548831ENST00000552881ENSG00000221507ENST00000408580ENSG00000242978ENST00000462678ENSG00000243746ENST00000475365CIL_0004XS_0002ENSMUSG00000029735ENSMUST00000067888ENSMUST00000114643ENSMUST00000114644ENSMUST00000149424ENSMUSG00000029736ENSMUST00000031749ENSMUST00000172554ENSMUST00000183706ENSMUSG00000084325ENSMUST00000120824
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000196511 ENST00000360057 1.312±0.00 2.012±0.00 N/A 0.433±0.00 0.647±0.00 0.499±0.00 0.691±0.00 1.377±0.00 1.039±0.20 1.232±0.50 N/A 0.797±0.52 1.376±0.63 N/A
ENST00000378098 N/A N/A 0.638±0.00 N/A 0.467±0.00 0.786±0.00 0.303±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000378099 0.522±0.00 0.426±0.00 N/A N/A N/A 0.368±0.00 N/A N/A N/A N/A 0.242±0.00 N/A 0.718±0.03 N/A
ENST00000481645 N/A N/A 0.159±0.00 N/A N/A 0.183±0.00 N/A N/A 0.248±0.00 N/A N/A 0.189±0.00 N/A N/A
ENST00000482940 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.771±0.00
ENST00000489798 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000538212 N/A N/A N/A N/A 0.174±0.00 N/A N/A N/A 0.406±0.00 N/A N/A N/A N/A N/A
ENST00000546806 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000547966 N/A N/A N/A 0.694±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 2.235±0.00 2.943±0.00
ENST00000548460 N/A N/A N/A N/A N/A N/A N/A 2.290±0.00 N/A N/A 0.529±0.00 1.149±0.00 N/A N/A
ENST00000548831 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.316±0.00 N/A N/A N/A N/A
ENST00000551062 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552881 N/A N/A 1.541±0.00 4.849±0.00 1.282±0.00 N/A 0.771±0.00 1.465±0.00 N/A 2.165±0.00 N/A N/A N/A N/A
ENSG00000221507 ENST00000408580 N/A N/A N/A 0.487±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000242978 ENST00000462678 N/A 0.061±0.00 N/A N/A N/A 0.056±0.00 N/A 0.090±0.00 N/A 0.028±0.00 N/A 0.048±0.00 N/A N/A
ENSG00000243746 ENST00000475365 0.734±0.00 0.770±0.00 0.041±0.00 0.276±0.00 0.454±0.32 0.486±0.10 0.127±0.08 0.270±0.23 0.136±0.02 0.275±0.18 0.429±0.00 0.121±0.08 0.069±0.05 0.279±0.12
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029735 ENSMUST00000067888 1.581±0.26 3.452±1.61 3.089±0.74 0.770±0.43 1.209±0.38 2.194±0.80 0.558±0.19 13.929±1.17 2.950±0.99 2.186±0.81 0.281±0.05 1.883±1.12 2.304±2.12 0.493±0.24
ENSMUST00000114643 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.045±0.00
ENSMUST00000114644 1.527±0.82 2.316±0.00 0.841±0.00 0.630±0.01 2.292±0.85 7.133±1.44 0.578±0.25 16.263±3.86 3.468±2.18 1.718±0.51 0.201±0.04 1.566±0.37 0.855±0.08 0.636±0.36
ENSMUST00000149424 N/A N/A N/A N/A N/A 7.477±0.00 N/A N/A 4.914±0.00 4.445±0.00 0.729±0.00 5.081±1.96 3.708±0.00 1.923±0.85
ENSMUST00000150599 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000029736 ENSMUST00000031749 0.021±0.01 0.064±0.02 0.039±0.02 0.004±0.00 N/A 0.030±0.00 N/A 0.038±0.01 0.019±0.01 0.065±0.04 N/A 5.523±2.01 0.066±0.07 0.052±0.02
ENSMUST00000172554 N/A N/A N/A 0.006±0.00 N/A N/A N/A 0.014±0.00 0.029±0.01 N/A N/A 2.232±0.85 0.097±0.05 0.019±0.01
ENSMUST00000183706 0.050±0.00 0.047±0.00 N/A 0.039±0.00 0.103±0.00 N/A N/A 0.082±0.04 N/A N/A N/A N/A N/A 0.078±0.00
ENSMUSG00000084325 ENSMUST00000120824 0.078±0.03 0.082±0.00 0.045±0.01 0.041±0.02 0.111±0.05 0.067±0.00 N/A 0.034±0.00 0.023±0.02 0.058±0.00 N/A N/A 0.047±0.03 0.045±0.01

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