Institute of Cardiovascular Regeneration Webtool Repository

Warning (512): _cake_core_ cache was unable to write 'cake_dev_eng' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'cake_dev_eng'
$value = array(
	'LC_MESSAGES' => array()
)
$config = '_cake_core_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/persistent/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
I18n::translate() - CORE/Cake/I18n/I18n.php, line 237
__d - CORE/Cake/basics.php, line 617
Cache::write() - CORE/Cake/Cache/Cache.php, line 321
DataSource::listSources() - CORE/Cake/Model/Datasource/DataSource.php, line 110
Mysql::listSources() - CORE/Cake/Model/Datasource/Database/Mysql.php, line 219
Model::setSource() - CORE/Cake/Model/Model.php, line 1142
Model::getDataSource() - CORE/Cake/Model/Model.php, line 3551
Model::query() - CORE/Cake/Model/Model.php, line 3353
RegionController::show() - APP/Controller/RegionController.php, line 338
ReflectionMethod::invokeArgs() - [internal], line ??
Controller::invokeAction() - CORE/Cake/Controller/Controller.php, line 490
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 191
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Warning (512): _cake_model_ cache was unable to write 'default_citloci_list' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'default_citloci_list'
$value = null
$config = '_cake_model_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/models/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
DataSource::listSources() - CORE/Cake/Model/Datasource/DataSource.php, line 110
Mysql::listSources() - CORE/Cake/Model/Datasource/Database/Mysql.php, line 219
Model::setSource() - CORE/Cake/Model/Model.php, line 1142
Model::getDataSource() - CORE/Cake/Model/Model.php, line 3551
Model::query() - CORE/Cake/Model/Model.php, line 3353
RegionController::show() - APP/Controller/RegionController.php, line 338
ReflectionMethod::invokeArgs() - [internal], line ??
Controller::invokeAction() - CORE/Cake/Controller/Controller.php, line 490
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 191
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Warning (512): _cake_model_ cache was unable to write 'default_citloci_list' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'default_citloci_list'
$value = array(
	(int) 0 => 'conserved_region_elements',
	(int) 1 => 'conserved_regions',
	(int) 2 => 'diffexp',
	(int) 3 => 'experiment',
	(int) 4 => 'expressed_transcripts',
	(int) 5 => 'external_accessions',
	(int) 6 => 'genes',
	(int) 7 => 'go_annotations',
	(int) 8 => 'homologues',
	(int) 9 => 'maptranscripttoregion',
	(int) 10 => 'organism',
	(int) 11 => 'sample',
	(int) 12 => 'study',
	(int) 13 => 'synonyms',
	(int) 14 => 'transcripts'
)
$config = '_cake_model_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/models/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
DataSource::listSources() - CORE/Cake/Model/Datasource/DataSource.php, line 110
Mysql::listSources() - CORE/Cake/Model/Datasource/Database/Mysql.php, line 236
Model::setSource() - CORE/Cake/Model/Model.php, line 1142
Model::getDataSource() - CORE/Cake/Model/Model.php, line 3551
Model::query() - CORE/Cake/Model/Model.php, line 3353
RegionController::show() - APP/Controller/RegionController.php, line 338
ReflectionMethod::invokeArgs() - [internal], line ??
Controller::invokeAction() - CORE/Cake/Controller/Controller.php, line 490
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 191
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Region Summary

CIL_0004XT_0001 (Click to Hide/Show)

Source ID	Type	Tax ID	Position
ENSG00000106462-ENSG00000155660	CGP	9606	7:148807383-149028641
Gene	Transcript	Position	Biotype
ENSG00000155660 (PDIA4) protein disulfide isomerase family A, member 4	ENST00000286091 (PDIA4-001)	149003062-149028641	protein_coding
	ENST00000413966 (PDIA4-002)	149019121-149028468	protein_coding
	ENST00000466592 (PDIA4-003)	149004199-149006283	retained_intron
ENSG00000201098 (RNY1) RNA, Ro-associated Y1	ENST00000364228 (RNY1-201)	148987136-148987248	misc_RNA
ENSG00000202354 (RNY3) RNA, Ro-associated Y3	ENST00000365484 (RNY3-201)	148983755-148983856	misc_RNA
ENSG00000239468 (RN7SL569P) RNA, 7SL, cytoplasmic 569, pseudogene	ENST00000494652 (RN7SL569P-201)	148890226-148890513	misc_RNA
ENSG00000252316 (RNY4) RNA, Ro-associated Y4	ENST00000516507 (RNY4-201)	148963315-148963410	misc_RNA
ENSG00000275586 (Metazoa_SRP) Metazoan signal recognition particle RNA	ENST00000615890 (Metazoa_SRP.1-325)	148876018-148876286	misc_RNA

CIL_0004XT_0002 (Click to Hide/Show)

Source ID	Type	Tax ID	Position
ENSMUSG00000029687-ENSMUSG00000025823	CGP	10090	6:47530274-47813512
Gene	Transcript	Position	Biotype
ENSMUSG00000025823 (Pdia4) protein disulfide isomerase associated 4	ENSMUST00000077290 (Pdia4-201)	47796142-47813512	protein_coding
ENSMUSG00000029687 (Ezh2) enhancer of zeste homolog 2 (Drosophila)	ENSMUST00000081721 (Ezh2-001)	47530274-47595030	protein_coding
	ENSMUST00000092648 (Ezh2-010)	47530541-47577660	protein_coding
	ENSMUST00000114616 (Ezh2-004)	47530274-47595030	protein_coding
	ENSMUST00000114618 (Ezh2-003)	47530274-47595030	protein_coding
	ENSMUST00000133043 (Ezh2-002)	47552386-47595341	protein_coding
	ENSMUST00000164006 (Ezh2-008)	47540843-47551761	nonsense_mediated_decay
	ENSMUST00000165492 (Ezh2-009)	47533742-47545883	retained_intron
	ENSMUST00000167278 (Ezh2-007)	47544006-47551761	nonsense_mediated_decay
	ENSMUST00000169889 (Ezh2-006)	47545783-47554214	nonsense_mediated_decay
	ENSMUST00000170311 (Ezh2-011)	47532630-47540709	retained_intron
	ENSMUST00000170327 (Ezh2-005)	47556027-47578010	retained_intron
	ENSMUST00000171614 (Ezh2-012)	47532010-47535125	retained_intron
ENSMUSG00000064945 (Rny3) RNA, Y3 small cytoplasmic (associated with Ro protein)	ENSMUST00000083011 (Rny3-201)	47781624-47781725	misc_RNA
ENSMUSG00000065701 (Rny1) RNA, Y1 small cytoplasmic, Ro-associated	ENSMUST00000083767 (Rny1-201)	47788069-47788180	misc_RNA
ENSMUSG00000094807 (Gm24975) predicted gene, 24975	ENSMUST00000178492 (Gm24975-201)	47773329-47773429	miRNA
ENSMUSG00000097255 (Rpl31-ps7) ribosomal protein L31, pseudogene 7	ENSMUST00000180629 (Rpl31-ps7-001)	47785996-47786374	processed_pseudogene

Expression Patterns

Heat Map

Heat Map (Expressed Only)

Numeric Values

Gene

Transcript

Adipose

Adrenal

Bladder

Brain

Breast

Colon

Heart

Kidney

Liver

Lung

Muscle

Ovary

Placenta

Testis

ENSG00000155660

ENST00000286091

33.419±0.00

67.887±0.00

5.478±0.00

7.331±2.73

25.093±0.37

30.875±14.00

6.373±3.30

65.521±22.75

109.613±100.65

30.260±16.81

3.197±2.47

55.375±12.22

80.971±10.45

36.729±16.88

ENST00000413966

N/A

ENST00000466592

N/A

ENSG00000201098

ENST00000364228

0.325±0.00

0.669±0.00

260.130±0.00

1734.658±1734.49

1020.920±0.00

162.385±161.48

1886.620±0.00

59.249±59.09

2087.630±0.00

2049.050±0.00

10580.400±0.00

201.050±274.95

1.492±0.00

0.408±0.26

ENSG00000202354

ENST00000365484

N/A

78.788±0.00

1642.690±0.00

190.681±0.00

113.266±0.00

N/A

216.435±0.00

260.403±0.00

4440.060±0.00

N/A

ENSG00000239468

ENST00000494652

N/A

0.503±0.00

N/A

0.102±0.00

N/A

0.819±0.00

ENSG00000252316

ENST00000516507

N/A

0.365±0.00

N/A

4248.960±0.00

117.148±0.00

N/A

ENSG00000275586

ENST00000615890

0.071±0.00

0.525±0.00

N/A

0.344±0.00

0.404±0.00

0.291±0.00

N/A

0.328±0.00

1.168±0.00

0.395±0.00

N/A

1.098±0.82

0.137±0.00

0.282±0.00

Gene

Transcript

Adipose

Adrenal

Bladder

Brain

Breast

Colon

Heart

Kidney

Liver

Lung

Muscle

Ovary

Placenta

Testis

ENSMUSG00000025823

ENSMUST00000077290

29.408±7.26

9.383±0.64

32.965±0.18

15.031±4.44

19.101±6.60

22.149±2.14

8.645±1.05

21.533±3.23

48.774±7.95

22.203±1.17

2.866±0.58

109.094±30.46

113.230±18.12

13.409±0.45

ENSMUSG00000029687

ENSMUST00000081721

1.582±0.67

0.357±0.13

4.223±0.75

23.338±5.08

1.406±0.24

0.817±0.21

0.548±0.24

0.871±0.23

11.582±10.91

1.111±0.35

0.767±0.16

2.080±2.03

10.314±6.51

N/A

ENSMUST00000092648

0.516±0.00

0.239±0.10

N/A

12.031±2.87

N/A

0.791±0.00

0.572±0.01

0.630±0.00

6.551±5.88

N/A

2.213±1.26

4.935±1.90

6.972±0.68

ENSMUST00000114616

1.605±0.00

0.359±0.14

N/A

0.542±0.00

N/A

0.221±0.00

0.400±0.11

0.514±0.20

0.403±0.00

N/A

6.405±0.00

N/A

7.004±0.00

ENSMUST00000114618

N/A

0.573±0.00

N/A

0.321±0.00

N/A

0.419±0.07

0.902±0.54

N/A

ENSMUST00000133043

N/A

1.824±0.00

N/A

15.021±0.00

22.287±16.30

43.733±0.00

ENSMUST00000164006

N/A

0.495±0.07

N/A

4.624±0.00

N/A

0.570±0.00

N/A

44.708±0.00

60.570±39.57

203.576±0.00

ENSMUST00000165492

1.238±0.53

0.380±0.16

3.235±0.00

7.474±7.03

0.962±0.24

1.389±0.51

0.263±0.06

0.406±0.05

2.421±2.30

0.505±0.00

0.226±0.00

1.874±0.86

N/A

ENSMUST00000167278

N/A

48.383±0.00

49.502±0.00

N/A

N/A

N/A

N/A

0.260±0.10

N/A

0.787±0.10

1.028±0.14

0.421±0.00

0.441±0.01

N/A

1.115±0.45

N/A

ENSMUSG00000064945

ENSMUST00000083011

3576.795±459.73

3694.810±368.36

N/A

174.165±0.00

6404.228±1162.49

14425.900±10166.10

6642.955±259.35

10308.007±4701.08

3036.090±0.00

3889.365±1455.88

N/A

12477.835±9097.69

131.926±47.42

3540.973±1169.52

ENSMUSG00000065701

ENSMUST00000083767

2309.780±0.00

4208.660±1252.62

111.300±0.00

157.070±86.66

7642.020±4316.08

3487.125±698.18

8343.368±4258.41

3912.657±606.97

814.243±1124.47

4292.210±0.00

N/A

6064.950±3274.43

68.782±42.53

4490.435±2776.77

ENSMUSG00000094807

ENSMUST00000178492

N/A

467296.000±0.00

N/A

231.972±0.00

N/A

ENSMUSG00000097255

ENSMUST00000180629

N/A

0.069±0.00

N/A

0.194±0.00

N/A

0.362±0.20

Warning (512): _cake_core_ cache was unable to write 'file_map' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'file_map'
$value = array(
	'Configure' => '/var/www/c-it-loci/lib/Cake/Core/Configure.php',
	'Hash' => '/var/www/c-it-loci/lib/Cake/Utility/Hash.php',
	'Cache' => '/var/www/c-it-loci/lib/Cake/Cache/Cache.php',
	'FileEngine' => '/var/www/c-it-loci/lib/Cake/Cache/Engine/FileEngine.php',
	'CacheEngine' => '/var/www/c-it-loci/lib/Cake/Cache/CacheEngine.php',
	'Inflector' => '/var/www/c-it-loci/lib/Cake/Utility/Inflector.php',
	'ErrorHandler' => '/var/www/c-it-loci/lib/Cake/Error/ErrorHandler.php',
	'CakePlugin' => '/var/www/c-it-loci/lib/Cake/Core/CakePlugin.php',
	'CakeLog' => '/var/www/c-it-loci/lib/Cake/Log/CakeLog.php',
	'LogEngineCollection' => '/var/www/c-it-loci/lib/Cake/Log/LogEngineCollection.php',
	'ObjectCollection' => '/var/www/c-it-loci/lib/Cake/Utility/ObjectCollection.php',
	'FileLog' => '/var/www/c-it-loci/lib/Cake/Log/Engine/FileLog.php',
	'BaseLog' => '/var/www/c-it-loci/lib/Cake/Log/Engine/BaseLog.php',
	'CakeLogInterface' => '/var/www/c-it-loci/lib/Cake/Log/CakeLogInterface.php',
	'Debugger' => '/var/www/c-it-loci/lib/Cake/Utility/Debugger.php',
	'String' => '/var/www/c-it-loci/lib/Cake/Utility/String.php',
	'Dispatcher' => '/var/www/c-it-loci/lib/Cake/Routing/Dispatcher.php',
	'CakeEventListener' => '/var/www/c-it-loci/lib/Cake/Event/CakeEventListener.php',
	'CakeRequest' => '/var/www/c-it-loci/lib/Cake/Network/CakeRequest.php',
	'CakeResponse' => '/var/www/c-it-loci/lib/Cake/Network/CakeResponse.php',
	'CakeEvent' => '/var/www/c-it-loci/lib/Cake/Event/CakeEvent.php',
	'CakeEventManager' => '/var/www/c-it-loci/lib/Cake/Event/CakeEventManager.php',
	'AssetDispatcher' => '/var/www/c-it-loci/lib/Cake/Routing/Filter/AssetDispatcher.php',
	'DispatcherFilter' => '/var/www/c-it-loci/lib/Cake/Routing/DispatcherFilter.php',
	'CacheDispatcher' => '/var/www/c-it-loci/lib/Cake/Routing/Filter/CacheDispatcher.php',
	'Router' => '/var/www/c-it-loci/lib/Cake/Routing/Router.php',
	'CakeRoute' => '/var/www/c-it-loci/lib/Cake/Routing/Route/CakeRoute.php',
	'PluginShortRoute' => '/var/www/c-it-loci/lib/Cake/Routing/Route/PluginShortRoute.php',
	'RegionController' => '/var/www/c-it-loci/app/Controller/RegionController.php',
	'AppController' => '/var/www/c-it-loci/app/Controller/AppController.php',
	'Controller' => '/var/www/c-it-loci/lib/Cake/Controller/Controller.php',
	'Object' => '/var/www/c-it-loci/lib/Cake/Core/Object.php',
	'ComponentCollection' => '/var/www/c-it-loci/lib/Cake/Controller/ComponentCollection.php',
	'SessionComponent' => '/var/www/c-it-loci/lib/Cake/Controller/Component/SessionComponent.php',
	'Component' => '/var/www/c-it-loci/lib/Cake/Controller/Component.php',
	'RequestHandlerComponent' => '/var/www/c-it-loci/lib/Cake/Controller/Component/RequestHandlerComponent.php',
	'ClassRegistry' => '/var/www/c-it-loci/lib/Cake/Utility/ClassRegistry.php',
	'Region' => '/var/www/c-it-loci/app/Model/Region.php',
	'AppModel' => '/var/www/c-it-loci/app/Model/AppModel.php',
	'Model' => '/var/www/c-it-loci/lib/Cake/Model/Model.php',
	'BehaviorCollection' => '/var/www/c-it-loci/lib/Cake/Model/BehaviorCollection.php',
	'ConnectionManager' => '/var/www/c-it-loci/lib/Cake/Model/ConnectionManager.php',
	'Mysql' => '/var/www/c-it-loci/lib/Cake/Model/Datasource/Database/Mysql.php',
	'DboSource' => '/var/www/c-it-loci/lib/Cake/Model/Datasource/DboSource.php',
	'DataSource' => '/var/www/c-it-loci/lib/Cake/Model/Datasource/DataSource.php',
	'I18n' => '/var/www/c-it-loci/lib/Cake/I18n/I18n.php',
	'L10n' => '/var/www/c-it-loci/lib/Cake/I18n/L10n.php',
	'CakeSession' => '/var/www/c-it-loci/lib/Cake/Model/Datasource/CakeSession.php',
	'View' => '/var/www/c-it-loci/lib/Cake/View/View.php',
	'HelperCollection' => '/var/www/c-it-loci/lib/Cake/View/HelperCollection.php',
	'ViewBlock' => '/var/www/c-it-loci/lib/Cake/View/ViewBlock.php',
	'HtmlHelper' => '/var/www/c-it-loci/lib/Cake/View/Helper/HtmlHelper.php',
	'AppHelper' => '/var/www/c-it-loci/app/View/Helper/AppHelper.php',
	'Helper' => '/var/www/c-it-loci/lib/Cake/View/Helper.php',
	'FormHelper' => '/var/www/c-it-loci/lib/Cake/View/Helper/FormHelper.php',
	'SessionHelper' => '/var/www/c-it-loci/lib/Cake/View/Helper/SessionHelper.php'
)
$config = '_cake_core_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/persistent/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
App::shutdown() - CORE/Cake/Core/App.php, line 899
[main] - [internal], line ??

Warning (512): _cake_core_ cache was unable to write 'method_cache' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'method_cache'
$value = array(
	(int) 0 => false,
	'name' => array(
		'45b989c52610ac6d773f6b83d6108190' => '`citloci`'
	)
)
$config = '_cake_core_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/persistent/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
DboSource::__destruct() - CORE/Cake/Model/Datasource/DboSource.php, line 3539
[main] - [internal], line ??

C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

Expression Patterns

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