C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004XT_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000106462-ENSG00000155660 CGP 9606 7:148807383-149028641
GeneTranscriptPositionBiotype
ENSG00000155660 (PDIA4)
protein disulfide isomerase family A, member 4 		ENST00000286091 (PDIA4-001) 149003062-149028641 protein_coding
ENST00000413966 (PDIA4-002) 149019121-149028468 protein_coding
ENST00000466592 (PDIA4-003) 149004199-149006283 retained_intron
ENSG00000201098 (RNY1)
RNA, Ro-associated Y1 		ENST00000364228 (RNY1-201) 148987136-148987248 misc_RNA
ENSG00000202354 (RNY3)
RNA, Ro-associated Y3 		ENST00000365484 (RNY3-201) 148983755-148983856 misc_RNA
ENSG00000239468 (RN7SL569P)
RNA, 7SL, cytoplasmic 569, pseudogene 		ENST00000494652 (RN7SL569P-201) 148890226-148890513 misc_RNA
ENSG00000252316 (RNY4)
RNA, Ro-associated Y4 		ENST00000516507 (RNY4-201) 148963315-148963410 misc_RNA
ENSG00000275586 (Metazoa_SRP)
Metazoan signal recognition particle RNA 		ENST00000615890 (Metazoa_SRP.1-325) 148876018-148876286 misc_RNA
CIL_0004XT_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000029687-ENSMUSG00000025823 CGP 10090 6:47530274-47813512
GeneTranscriptPositionBiotype
ENSMUSG00000025823 (Pdia4)
protein disulfide isomerase associated 4 		ENSMUST00000077290 (Pdia4-201) 47796142-47813512 protein_coding
ENSMUSG00000029687 (Ezh2)
enhancer of zeste homolog 2 (Drosophila) 		ENSMUST00000081721 (Ezh2-001) 47530274-47595030 protein_coding
ENSMUST00000092648 (Ezh2-010) 47530541-47577660 protein_coding
ENSMUST00000114616 (Ezh2-004) 47530274-47595030 protein_coding
ENSMUST00000114618 (Ezh2-003) 47530274-47595030 protein_coding
ENSMUST00000133043 (Ezh2-002) 47552386-47595341 protein_coding
ENSMUST00000164006 (Ezh2-008) 47540843-47551761 nonsense_mediated_decay
ENSMUST00000165492 (Ezh2-009) 47533742-47545883 retained_intron
ENSMUST00000167278 (Ezh2-007) 47544006-47551761 nonsense_mediated_decay
ENSMUST00000169889 (Ezh2-006) 47545783-47554214 nonsense_mediated_decay
ENSMUST00000170311 (Ezh2-011) 47532630-47540709 retained_intron
ENSMUST00000170327 (Ezh2-005) 47556027-47578010 retained_intron
ENSMUST00000171614 (Ezh2-012) 47532010-47535125 retained_intron
ENSMUSG00000064945 (Rny3)
RNA, Y3 small cytoplasmic (associated with Ro protein) 		ENSMUST00000083011 (Rny3-201) 47781624-47781725 misc_RNA
ENSMUSG00000065701 (Rny1)
RNA, Y1 small cytoplasmic, Ro-associated 		ENSMUST00000083767 (Rny1-201) 47788069-47788180 misc_RNA
ENSMUSG00000094807 (Gm24975)
predicted gene, 24975 		ENSMUST00000178492 (Gm24975-201) 47773329-47773429 miRNA
ENSMUSG00000097255 (Rpl31-ps7)
ribosomal protein L31, pseudogene 7 		ENSMUST00000180629 (Rpl31-ps7-001) 47785996-47786374 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004XT_0001ENSG00000155660ENST00000286091ENST00000413966ENST00000466592ENSG00000201098ENST00000364228ENSG00000202354ENST00000365484ENSG00000239468ENST00000494652ENSG00000252316ENST00000516507ENSG00000275586ENST00000615890CIL_0004XT_0002ENSMUSG00000025823ENSMUST00000077290ENSMUSG00000029687ENSMUST00000081721ENSMUST00000092648ENSMUST00000114616ENSMUST00000114618ENSMUST00000133043ENSMUST00000164006ENSMUST00000165492ENSMUST00000167278ENSMUST00000169889ENSMUST00000170311ENSMUST00000170327ENSMUST00000171614ENSMUSG00000064945ENSMUST00000083011ENSMUSG00000065701ENSMUST00000083767ENSMUSG00000094807ENSMUST00000178492ENSMUSG00000097255ENSMUST00000180629
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004XT_0001ENSG00000155660ENST00000286091ENSG00000201098ENST00000364228ENSG00000202354ENST00000365484ENSG00000239468ENST00000494652ENSG00000252316ENST00000516507ENSG00000275586ENST00000615890CIL_0004XT_0002ENSMUSG00000025823ENSMUST00000077290ENSMUSG00000029687ENSMUST00000081721ENSMUST00000092648ENSMUST00000114616ENSMUST00000114618ENSMUST00000133043ENSMUST00000164006ENSMUST00000165492ENSMUST00000167278ENSMUST00000171614ENSMUSG00000064945ENSMUST00000083011ENSMUSG00000065701ENSMUST00000083767ENSMUSG00000094807ENSMUST00000178492ENSMUSG00000097255ENSMUST00000180629
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000155660 ENST00000286091 33.419±0.00 67.887±0.00 5.478±0.00 7.331±2.73 25.093±0.37 30.875±14.00 6.373±3.30 65.521±22.75 109.613±100.65 30.260±16.81 3.197±2.47 55.375±12.22 80.971±10.45 36.729±16.88
ENST00000413966 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000466592 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000201098 ENST00000364228 0.325±0.00 0.669±0.00 260.130±0.00 1734.658±1734.49 1020.920±0.00 162.385±161.48 1886.620±0.00 59.249±59.09 2087.630±0.00 2049.050±0.00 10580.400±0.00 201.050±274.95 1.492±0.00 0.408±0.26
ENSG00000202354 ENST00000365484 N/A N/A N/A 78.788±0.00 1642.690±0.00 190.681±0.00 113.266±0.00 N/A 216.435±0.00 260.403±0.00 4440.060±0.00 N/A N/A N/A
ENSG00000239468 ENST00000494652 N/A N/A N/A N/A 0.503±0.00 N/A N/A N/A N/A N/A N/A 0.102±0.00 N/A 0.819±0.00
ENSG00000252316 ENST00000516507 N/A N/A N/A N/A N/A N/A N/A N/A 0.365±0.00 N/A 4248.960±0.00 117.148±0.00 N/A N/A
ENSG00000275586 ENST00000615890 0.071±0.00 0.525±0.00 N/A 0.344±0.00 0.404±0.00 0.291±0.00 N/A 0.328±0.00 1.168±0.00 0.395±0.00 N/A 1.098±0.82 0.137±0.00 0.282±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000025823 ENSMUST00000077290 29.408±7.26 9.383±0.64 32.965±0.18 15.031±4.44 19.101±6.60 22.149±2.14 8.645±1.05 21.533±3.23 48.774±7.95 22.203±1.17 2.866±0.58 109.094±30.46 113.230±18.12 13.409±0.45
ENSMUSG00000029687 ENSMUST00000081721 1.582±0.67 0.357±0.13 4.223±0.75 23.338±5.08 1.406±0.24 0.817±0.21 0.548±0.24 0.871±0.23 11.582±10.91 1.111±0.35 0.767±0.16 2.080±2.03 10.314±6.51 N/A
ENSMUST00000092648 0.516±0.00 0.239±0.10 N/A 12.031±2.87 N/A 0.791±0.00 0.572±0.01 0.630±0.00 6.551±5.88 N/A N/A 2.213±1.26 4.935±1.90 6.972±0.68
ENSMUST00000114616 1.605±0.00 0.359±0.14 N/A 0.542±0.00 N/A N/A 0.221±0.00 0.400±0.11 0.514±0.20 0.403±0.00 N/A 6.405±0.00 N/A 7.004±0.00
ENSMUST00000114618 N/A N/A N/A N/A N/A 0.573±0.00 N/A 0.321±0.00 N/A N/A 0.419±0.07 0.902±0.54 N/A N/A
ENSMUST00000133043 N/A N/A N/A 1.824±0.00 N/A N/A N/A N/A N/A N/A N/A 15.021±0.00 22.287±16.30 43.733±0.00
ENSMUST00000164006 N/A 0.495±0.07 N/A 4.624±0.00 N/A N/A N/A N/A 0.570±0.00 N/A N/A 44.708±0.00 60.570±39.57 203.576±0.00
ENSMUST00000165492 1.238±0.53 0.380±0.16 3.235±0.00 7.474±7.03 0.962±0.24 1.389±0.51 0.263±0.06 0.406±0.05 2.421±2.30 0.505±0.00 0.226±0.00 1.874±0.86 N/A N/A
ENSMUST00000167278 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 48.383±0.00 49.502±0.00
ENSMUST00000169889 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000170311 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000170327 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000171614 N/A 0.260±0.10 N/A N/A 0.787±0.10 1.028±0.14 0.421±0.00 0.441±0.01 N/A N/A N/A 1.115±0.45 N/A N/A
ENSMUSG00000064945 ENSMUST00000083011 3576.795±459.73 3694.810±368.36 N/A 174.165±0.00 6404.228±1162.49 14425.900±10166.10 6642.955±259.35 10308.007±4701.08 3036.090±0.00 3889.365±1455.88 N/A 12477.835±9097.69 131.926±47.42 3540.973±1169.52
ENSMUSG00000065701 ENSMUST00000083767 2309.780±0.00 4208.660±1252.62 111.300±0.00 157.070±86.66 7642.020±4316.08 3487.125±698.18 8343.368±4258.41 3912.657±606.97 814.243±1124.47 4292.210±0.00 N/A 6064.950±3274.43 68.782±42.53 4490.435±2776.77
ENSMUSG00000094807 ENSMUST00000178492 N/A N/A N/A 467296.000±0.00 N/A N/A N/A N/A 231.972±0.00 N/A N/A N/A N/A N/A
ENSMUSG00000097255 ENSMUST00000180629 N/A N/A N/A 0.069±0.00 N/A N/A N/A N/A 0.194±0.00 N/A N/A N/A N/A 0.362±0.20

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