C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transmembrane and coiled-coil domains 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000045229 Tmco3-201 ENSMUSG00000038497 10090 + 8:13288013-13322924 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000045229
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000045229 5.323±0.70 13.692±0.47 3.166±0.86 5.402±3.10 9.207±1.83 31.376±8.02 4.246±0.63 12.858±4.49 1.903±0.62 9.664±0.25 2.795±0.28 9.738±4.95 1.687±0.94 1.736±1.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00058D CIL_00058D_0003 CGP 8:13235655-13288126
CIL_0004Z2 CIL_0004Z2_0003 CGP 8:13255963-13322924
CIL_0000TH CIL_0000TH_0002 CGP 8:13288013-13377702

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0015299 IEA solute:proton antiporter activity
GO:0016021 IEA integral component of membrane
GO:1902600 IEA hydrogen ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000375391 TMCO3-008 protein_coding Homo_sapiens 0 1127
ENST00000434316 TMCO3-007 protein_coding Homo_sapiens 0 1881
ENST00000460039 TMCO3-002 processed_transcript Homo_sapiens 0 350
ENST00000473287 TMCO3-005 protein_coding Homo_sapiens 0 348
ENST00000474393 TMCO3-006 protein_coding Homo_sapiens 0 1386
ENST00000491166 TMCO3-003 processed_transcript Homo_sapiens 0 346
ENST00000619336 TMCO3-011 nonsense_mediated_decay Homo_sapiens 0 215
ENST00000620021 TMCO3-010 protein_coding Homo_sapiens 0 241

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