C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00057E_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000198205-ENSG00000186767 CGP 9606 X:57906708-63351344
GeneTranscriptPositionBiotype
ENSG00000186767 (SPIN4)
spindlin family, member 4 		ENST00000335144 (SPIN4-201) 63347228-63351339 protein_coding
ENST00000374884 (SPIN4-001) 63347228-63351344 protein_coding
ENSG00000198205 (ZXDA)
zinc finger, X-linked, duplicated A 		ENST00000358697 (ZXDA-001) 57906708-57910820 protein_coding
ENSG00000228004 (MYCLP2)
MYCL pseudogene 2 		ENST00000449268 (MYCLP2-001) 57933837-57934803 processed_pseudogene
ENSG00000230823 (CBX1P1)
chromobox homolog 1 pseudogene 1 		ENST00000440184 (CBX1P1-001) 63299247-63299673 processed_pseudogene
ENSG00000233661 (SPIN4-AS1)
SPIN4 antisense RNA 1 		ENST00000451979 (SPIN4-AS1-001) 63349646-63352178 antisense
ENSG00000234570 (ZFRP1)
zinc finger RNA binding protein pseudogene 1 		ENST00000457579 (ZFRP1-001) 62878811-62884842 processed_pseudogene
ENSG00000235124 (KRT8P17)
keratin 8 pseudogene 17 		ENST00000453110 (KRT8P17-001) 57984686-57986133 processed_pseudogene
ENSG00000235437 (LINC01278)
long intergenic non-protein coding RNA 1278 		ENST00000433061 (LINC01278-001) 63509942-63561049 sense_overlapping
ENST00000608623 (LINC01278-004) 63426560-63431612 retained_intron
ENST00000608788 (LINC01278-007) 63399404-63561023 sense_overlapping
ENST00000609143 (LINC01278-002) 63426560-63561049 sense_overlapping
ENST00000609401 (LINC01278-003) 63426559-63560993 sense_overlapping
ENST00000610088 (LINC01278-005) 63343227-63561071 sense_overlapping
ENST00000610234 (LINC01278-006) 63345489-63561052 sense_overlapping
ENSG00000236852 (RP11-3D23.1)
 ENST00000455793 (RP11-3D23.1-001) 62779250-62780326 processed_pseudogene
ENSG00000277499 (RP11-144M17.1)
 ENST00000614203 (RP11-144M17.1-001) 63087071-63088664 processed_pseudogene
CIL_00057E_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000073062-ENSMUSG00000071722 CGP 10090 X:94724569-95026682
GeneTranscriptPositionBiotype
ENSMUSG00000071722 (Spin4)
spindlin family, member 4 		ENSMUST00000096367 (Spin4-001) 95022510-95026682 protein_coding
ENSMUSG00000073062 (Zxdb)
zinc finger, X-linked, duplicated B 		ENSMUST00000101388 (Zxdb-001) 94724569-94730187 protein_coding
ENSMUSG00000081418 (Gm14830)
predicted gene 14830 		ENSMUST00000121899 (Gm14830-001) 94774978-94775677 processed_pseudogene
ENSMUSG00000082776 (Gm7061)
predicted gene 7061 		ENSMUST00000118127 (Gm7061-001) 94772619-94774034 processed_pseudogene
ENSMUSG00000082964 (Rpl13-ps5)
ribosomal protein L13, pseudogene 5 		ENSMUST00000117813 (Rpl13-ps5-001) 94789717-94790346 processed_pseudogene
ENSMUSG00000087522 (Gm371)
predicted pseudogene 371 		ENSMUST00000142240 (Gm371-001) 94997439-94998683 processed_pseudogene
ENSMUSG00000097340 (Gm26617)
predicted gene, 26617 		ENSMUST00000180381 (Gm26617-201) 94793103-94798237 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00057E_0001ENSG00000186767ENST00000335144ENST00000374884ENSG00000198205ENST00000358697ENSG00000228004ENST00000449268ENSG00000230823ENST00000440184ENSG00000233661ENST00000451979ENSG00000234570ENST00000457579ENSG00000235124ENST00000453110ENSG00000235437ENST00000433061ENST00000608623ENST00000608788ENST00000609143ENST00000609401ENST00000610088ENST00000610234ENSG00000236852ENST00000455793ENSG00000277499ENST00000614203CIL_00057E_0002ENSMUSG00000071722ENSMUST00000096367ENSMUSG00000073062ENSMUST00000101388ENSMUSG00000081418ENSMUST00000121899ENSMUSG00000082776ENSMUST00000118127ENSMUSG00000082964ENSMUST00000117813ENSMUSG00000087522ENSMUST00000142240ENSMUSG00000097340ENSMUST00000180381
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00057E_0001ENSG00000186767ENST00000335144ENST00000374884ENSG00000198205ENST00000358697ENSG00000228004ENST00000449268ENSG00000230823ENST00000440184ENSG00000233661ENST00000451979ENSG00000234570ENST00000457579ENSG00000235124ENST00000453110ENSG00000235437ENST00000433061ENST00000608623ENST00000608788ENST00000609143ENST00000609401ENST00000610234ENSG00000236852ENST00000455793ENSG00000277499ENST00000614203CIL_00057E_0002ENSMUSG00000071722ENSMUST00000096367ENSMUSG00000073062ENSMUST00000101388ENSMUSG00000081418ENSMUST00000121899ENSMUSG00000082776ENSMUST00000118127ENSMUSG00000082964ENSMUST00000117813ENSMUSG00000087522ENSMUST00000142240ENSMUSG00000097340ENSMUST00000180381
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000186767 ENST00000335144 N/A 0.741±0.00 0.029±0.00 0.492±0.17 0.453±0.06 0.476±0.06 0.088±0.01 0.273±0.22 0.330±0.23 1.150±0.78 0.041±0.01 0.340±0.20 1.325±1.15 0.471±0.20
ENST00000374884 0.737±0.00 0.741±0.00 0.029±0.00 0.326±0.00 0.452±0.06 0.475±0.06 0.088±0.01 0.273±0.22 0.326±0.23 0.373±0.00 0.041±0.01 0.620±0.52 0.513±0.10 0.470±0.20
ENSG00000198205 ENST00000358697 0.725±0.00 0.831±0.00 0.602±0.00 0.827±0.22 1.219±0.52 0.716±0.10 0.362±0.00 0.604±0.10 0.824±0.61 0.618±0.27 0.398±0.13 0.430±0.06 0.216±0.07 0.361±0.00
ENSG00000228004 ENST00000449268 N/A N/A N/A N/A N/A N/A N/A 0.055±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000230823 ENST00000440184 0.032±0.00 0.179±0.00 0.203±0.00 0.255±0.00 0.579±0.00 0.237±0.00 N/A N/A 0.483±0.00 0.114±0.00 0.064±0.00 0.512±0.00 0.030±0.00 0.094±0.00
ENSG00000233661 ENST00000451979 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.681±0.00 N/A N/A
ENSG00000234570 ENST00000457579 N/A N/A N/A N/A N/A N/A 0.013±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000235124 ENST00000453110 N/A N/A N/A N/A N/A 0.013±0.00 0.012±0.00 0.041±0.00 0.036±0.00 N/A N/A 0.051±0.00 N/A N/A
ENSG00000235437 ENST00000433061 N/A N/A N/A 2.164±0.00 2.478±0.00 N/A 1.448±0.00 N/A N/A N/A N/A 0.226±0.00 N/A 0.965±0.00
ENST00000608623 0.557±0.00 1.145±0.00 N/A 0.615±0.00 0.518±0.02 0.632±0.37 0.695±0.00 0.555±0.47 0.524±0.00 1.504±0.00 0.609±0.00 0.942±0.55 N/A 0.527±0.01
ENST00000608788 N/A N/A N/A N/A N/A 1.923±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000609143 4.810±0.00 6.494±0.00 7.160±0.00 2.931±0.37 4.653±0.00 5.605±4.35 4.959±0.00 2.664±1.97 2.742±0.13 3.881±2.64 3.988±1.60 4.034±3.31 7.022±2.68 3.025±2.13
ENST00000609401 N/A N/A 1.360±0.00 1.822±0.00 1.081±0.00 2.847±0.00 0.543±0.32 1.437±0.00 N/A 0.807±0.00 N/A 2.829±0.00 1.949±0.34 1.734±0.00
ENST00000610088 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000610234 N/A N/A N/A 2.435±0.00 N/A N/A 0.967±0.00 N/A N/A N/A N/A N/A N/A 1.350±0.00
ENSG00000236852 ENST00000455793 0.009±0.00 N/A N/A 0.016±0.00 N/A 0.015±0.00 N/A 0.008±0.00 0.008±0.00 N/A N/A 0.234±0.20 N/A 0.008±0.00
ENSG00000277499 ENST00000614203 N/A N/A N/A 0.027±0.00 0.006±0.00 N/A 0.081±0.07 N/A N/A 0.218±0.00 N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000071722 ENSMUST00000096367 1.326±0.78 1.224±0.31 2.273±0.16 0.559±0.35 0.842±0.47 0.606±0.18 0.259±0.05 0.287±0.06 0.251±0.15 1.435±0.21 0.062±0.03 2.636±1.25 0.835±0.24 0.093±0.06
ENSMUSG00000073062 ENSMUST00000101388 0.335±0.08 0.193±0.06 1.291±0.02 0.956±0.16 0.230±0.18 0.079±0.02 0.173±0.05 0.247±0.12 0.191±0.10 0.413±0.19 0.205±0.03 0.426±0.42 2.177±0.21 0.133±0.05
ENSMUSG00000081418 ENSMUST00000121899 0.213±0.05 N/A 0.364±0.07 0.241±0.21 0.337±0.32 0.180±0.07 0.120±0.00 0.068±0.00 0.094±0.08 0.187±0.09 0.153±0.10 0.257±0.08 0.191±0.07 0.068±0.00
ENSMUSG00000082776 ENSMUST00000118127 0.236±0.05 0.152±0.11 0.584±0.04 0.674±0.86 0.360±0.17 0.318±0.16 0.144±0.05 0.161±0.05 0.050±0.03 0.403±0.13 0.209±0.07 0.468±0.23 0.574±0.28 0.284±0.08
ENSMUSG00000082964 ENSMUST00000117813 0.092±0.03 0.254±0.11 0.190±0.05 0.057±0.03 0.273±0.17 0.305±0.17 0.058±0.00 0.399±0.22 0.216±0.21 0.263±0.08 0.069±0.02 0.299±0.11 0.154±0.10 0.061±0.00
ENSMUSG00000087522 ENSMUST00000142240 0.150±0.09 0.172±0.07 0.045±0.01 0.049±0.00 0.261±0.11 0.075±0.01 0.047±0.01 0.030±0.00 0.019±0.01 0.165±0.05 0.030±0.01 0.348±0.17 0.609±0.59 0.596±0.14
ENSMUSG00000097340 ENSMUST00000180381 0.281±0.03 0.096±0.06 0.979±0.02 0.763±0.44 0.314±0.19 0.084±0.04 0.336±0.10 0.229±0.08 0.227±0.13 0.441±0.21 0.268±0.05 0.563±0.33 2.259±0.50 0.149±0.11

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