C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L13, pseudogene 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000117813 Rpl13-ps5-001 ENSMUSG00000082964 10090 + X:94789717-94790346 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000117813
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000117813 0.092±0.03 0.254±0.11 0.190±0.05 0.057±0.03 0.273±0.17 0.305±0.17 0.058±0.00 0.399±0.22 0.216±0.21 0.263±0.08 0.069±0.02 0.299±0.11 0.154±0.10 0.061±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00057E CIL_00057E_0002 CGP X:94724569-95026682

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000311528 RPL13-001 protein_coding Homo_sapiens 0 433
ENST00000392730 RPL13P12-001 processed_pseudogene Homo_sapiens 0 416
ENST00000393099 RPL13-002 protein_coding Homo_sapiens 0 433
ENST00000396818 RPL13P-001 processed_pseudogene Homo_sapiens 0 307
ENST00000399461 RPL13-003 retained_intron Homo_sapiens 0 346
ENST00000412023 RPL13P5-002 processed_transcript Homo_sapiens 0 207
ENST00000413822 RPL13P-001 processed_pseudogene Homo_sapiens 0 302
ENST00000421824 RPL13P5-004 processed_transcript Homo_sapiens 1e-26 124
ENST00000427418 RPL13P-001 processed_pseudogene Homo_sapiens 0 302
ENST00000431236 RPL13P-001 processed_pseudogene Homo_sapiens 0 302
ENST00000440069 RPL13P-001 processed_pseudogene Homo_sapiens 0 307
ENST00000440687 RPL13P2-001 processed_pseudogene Homo_sapiens 0 257
ENST00000441655 RPL13P5-001 transcribed_processed_pseudogene Homo_sapiens 0 207
ENST00000451612 RPL13P5-003 processed_transcript Homo_sapiens 0.0000000000006 79
ENST00000452368 RPL13-015 protein_coding Homo_sapiens 3e-39 167
ENST00000473114 RP11-333A23.2-001 processed_pseudogene Homo_sapiens 2.8026e-45 185
ENST00000474329 CTD-2086L14.1-001 processed_pseudogene Homo_sapiens 1.4013e-45 187
ENST00000484610 RPL13-004 retained_intron Homo_sapiens 0 279
ENST00000491523 RPL13-005 retained_intron Homo_sapiens 0 283
ENST00000562879 RPL13-011 nonsense_mediated_decay Homo_sapiens 0 278
ENST00000563270 RPL13-016 protein_coding Homo_sapiens 0 335
ENST00000567815 RPL13-009 protein_coding Homo_sapiens 0 433
ENST00000593989 RPL13P-001 processed_pseudogene Homo_sapiens 0 307
ENST00000608758 RPL13P-001 processed_pseudogene Homo_sapiens 0 307
ENST00000609856 RPL13P-001 processed_pseudogene Homo_sapiens 0 307

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