C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005CP_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000183186-ENSG00000129946 CGP 9606 19:405438-460996
GeneTranscriptPositionBiotype
ENSG00000129946 (SHC2)
SHC (Src homology 2 domain containing) transforming protein 2 		ENST00000264554 (SHC2-001) 416583-460996 protein_coding
ENST00000587423 (SHC2-004) 416589-419879 retained_intron
ENST00000588376 (SHC2-003) 416589-422828 retained_intron
ENST00000589922 (SHC2-002) 422243-441384 retained_intron
ENST00000590113 (SHC2-006) 435771-439030 processed_transcript
ENST00000590170 (SHC2-008) 417200-436258 nonsense_mediated_decay
ENST00000590222 (SHC2-007) 430741-460571 nonsense_mediated_decay
ENSG00000183186 (C2CD4C)
C2 calcium-dependent domain containing 4C 		ENST00000332235 (C2CD4C-001) 405438-409139 protein_coding
ENSG00000252539 (RNA5SP462)
RNA, 5S ribosomal pseudogene 462 		ENST00000516730 (RNA5SP462-201) 453134-453245 rRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0005CP_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000045912-ENSMUSG00000020312 CGP 10090 10:79606857-79637918
GeneTranscriptPositionBiotype
ENSMUSG00000020312 (Shc2)
SHC (Src homology 2 domain containing) transforming protein 2 		ENSMUST00000020564 (Shc2-001) 79618652-79637918 protein_coding
ENSMUST00000163867 (Shc2-201) 79617940-79637918 protein_coding
ENSMUST00000166450 (Shc2-003) 79620091-79623080 retained_intron
ENSMUST00000168116 (Shc2-002) 79618051-79622724 retained_intron
ENSMUSG00000045912 (C2cd4c)
C2 calcium-dependent domain containing 4C 		ENSMUST00000059699 (C2cd4c-201) 79606857-79614018 protein_coding
ENSMUST00000178228 (C2cd4c-202) 79606857-79614025 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005CP_0001ENSG00000129946ENST00000264554ENST00000587423ENST00000588376ENST00000589922ENST00000590113ENST00000590170ENST00000590222ENSG00000183186ENST00000332235ENSG00000252539ENST00000516730CIL_0005CP_0002ENSMUSG00000020312ENSMUST00000020564ENSMUST00000163867ENSMUST00000166450ENSMUST00000168116ENSMUSG00000045912ENSMUST00000059699ENSMUST00000178228
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005CP_0001ENSG00000129946ENST00000264554ENST00000587423ENST00000588376ENST00000589922ENST00000590170ENST00000590222ENSG00000183186ENST00000332235ENSG00000252539ENST00000516730CIL_0005CP_0002ENSMUSG00000020312ENSMUST00000020564ENSMUST00000163867ENSMUST00000168116ENSMUSG00000045912ENSMUST00000059699ENSMUST00000178228
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000129946 ENST00000264554 8.087±0.00 7.354±0.00 N/A 6.660±5.50 4.674±4.03 11.314±0.00 4.123±3.78 3.347±2.19 11.212±10.46 1.385±1.25 0.356±0.00 11.853±13.13 13.433±7.31 6.617±1.48
ENST00000587423 N/A 1.490±0.00 0.214±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000588376 N/A 3.126±0.00 N/A 2.249±1.31 N/A 3.032±0.00 N/A 2.343±1.03 0.345±0.00 3.301±2.56 0.261±0.00 3.210±2.82 N/A 2.823±0.00
ENST00000589922 N/A N/A 0.037±0.00 N/A N/A 0.062±0.00 N/A N/A N/A N/A N/A 2.831±0.00 N/A N/A
ENST00000590113 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000590170 N/A N/A 0.097±0.00 N/A N/A N/A N/A N/A N/A N/A 1.391±0.00 N/A N/A N/A
ENST00000590222 N/A N/A N/A 1.232±0.00 N/A N/A 0.158±0.00 1.507±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000183186 ENST00000332235 0.786±0.00 0.901±0.00 N/A 2.799±1.36 1.802±0.00 0.442±0.00 0.392±0.38 0.174±0.11 0.229±0.19 0.260±0.00 0.032±0.00 0.300±0.26 0.267±0.20 0.657±0.03
ENSG00000252539 ENST00000516730 N/A 0.265±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000020312 ENSMUST00000020564 2.490±1.42 1.616±0.57 0.930±0.34 7.401±2.22 3.138±1.58 1.284±0.59 0.392±0.01 0.291±0.07 0.082±0.06 0.622±0.30 1.497±0.61 3.901±1.57 0.646±0.48 1.216±0.30
ENSMUST00000163867 4.558±1.86 1.514±0.61 1.201±0.36 6.973±0.31 2.203±0.79 1.029±0.27 0.652±0.18 0.302±0.10 0.054±0.02 0.250±0.06 1.683±0.21 3.356±1.41 0.549±0.24 1.092±0.20
ENSMUST00000166450 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000168116 2.109±0.09 N/A 0.521±0.03 3.420±0.00 0.807±0.00 N/A 0.213±0.04 0.112±0.04 0.033±0.01 N/A N/A 0.611±0.20 0.153±0.02 0.573±0.03
ENSMUSG00000045912 ENSMUST00000059699 0.168±0.02 0.074±0.00 N/A 0.902±0.37 0.080±0.02 1.053±0.09 N/A 0.015±0.00 0.019±0.00 0.009±0.00 N/A 0.340±0.10 0.120±0.05 0.330±0.08
ENSMUST00000178228 0.024±0.00 0.029±0.00 0.013±0.00 N/A 0.045±0.02 0.120±0.01 0.010±0.00 0.010±0.00 0.016±0.01 0.016±0.00 0.119±0.03 0.091±0.03 0.040±0.00 0.039±0.00

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