C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005FC_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000137815-ENSG00000137825 CGP 9606 15:41408408-41503551
GeneTranscriptPositionBiotype
ENSG00000137815 (RTF1)
Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) 		ENST00000389629 (RTF1-001) 41417104-41483563 protein_coding
ENST00000462276 (RTF1-002) 41417132-41452994 processed_transcript
ENST00000473214 (RTF1-003) 41474587-41477249 retained_intron
ENST00000558117 (RTF1-005) 41477189-41478943 retained_intron
ENST00000558298 (RTF1-004) 41408408-41452942 processed_transcript
ENST00000560447 (RTF1-007) 41474669-41477578 protein_coding
ENST00000561076 (RTF1-006) 41478485-41480290 retained_intron
ENSG00000137825 (ITPKA)
inositol-trisphosphate 3-kinase A 		ENST00000260386 (ITPKA-001) 41493875-41503551 protein_coding
ENST00000425927 (ITPKA-002) 41493393-41502488 protein_coding
ENST00000462816 (ITPKA-003) 41501439-41503099 retained_intron
ENST00000491007 (ITPKA-004) 41501794-41502645 retained_intron
CIL_0005FC_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000027304-ENSMUSG00000027296 CGP 10090 2:119675068-119751263
GeneTranscriptPositionBiotype
ENSMUSG00000027296 (Itpka)
inositol 1,4,5-trisphosphate 3-kinase A 		ENSMUST00000028758 (Itpka-001) 119742337-119751263 protein_coding
ENSMUSG00000027304 (Rtf1)
Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) 		ENSMUST00000028767 (Rtf1-001) 119675068-119735407 protein_coding
ENSMUST00000126984 (Rtf1-004) 119726684-119727652 retained_intron
ENSMUST00000136321 (Rtf1-002) 119675072-119692221 processed_transcript
ENSMUST00000149904 (Rtf1-003) 119710996-119712462 retained_intron
ENSMUSG00000064722 (Gm25857)
predicted gene, 25857 		ENSMUST00000082788 (Gm25857-201) 119740828-119740956 snoRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005FC_0001ENSG00000137815ENST00000389629ENST00000462276ENST00000473214ENST00000558117ENST00000558298ENST00000560447ENST00000561076ENSG00000137825ENST00000260386ENST00000425927ENST00000462816ENST00000491007CIL_0005FC_0002ENSMUSG00000027296ENSMUST00000028758ENSMUSG00000027304ENSMUST00000028767ENSMUST00000126984ENSMUST00000136321ENSMUST00000149904ENSMUSG00000064722ENSMUST00000082788
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005FC_0001ENSG00000137815ENST00000389629ENST00000560447ENSG00000137825ENST00000260386ENST00000425927ENST00000462816CIL_0005FC_0002ENSMUSG00000027296ENSMUST00000028758ENSMUSG00000027304ENSMUST00000028767ENSMUSG00000064722ENSMUST00000082788
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000137815 ENST00000389629 1.598±0.00 14.074±0.00 1.882±0.00 2.268±0.60 6.153±3.49 1.183±0.85 1.515±0.37 1.378±0.12 0.880±0.37 7.770±0.00 7.380±5.13 6.634±4.24 7.937±7.64 9.268±6.97
ENST00000462276 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473214 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558117 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558298 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560447 N/A N/A N/A N/A N/A N/A N/A 5.900±0.00 N/A N/A N/A N/A N/A N/A
ENST00000561076 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000137825 ENST00000260386 N/A 0.066±0.00 N/A 6.467±5.04 0.113±0.04 1.550±0.47 0.369±0.00 0.089±0.04 0.133±0.00 0.797±0.00 N/A 2.563±1.01 0.552±0.26 4.641±2.11
ENST00000425927 N/A N/A 0.438±0.00 N/A N/A N/A 0.440±0.00 N/A N/A N/A N/A N/A N/A 3.566±0.00
ENST00000462816 N/A N/A N/A 8.639±0.00 N/A N/A 0.853±0.00 N/A N/A 0.313±0.00 N/A 0.905±0.00 0.130±0.00 2.335±0.00
ENST00000491007 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027296 ENSMUST00000028758 1.181±0.48 2.202±1.10 0.327±0.04 34.084±47.92 1.752±0.59 6.880±0.85 0.361±0.23 1.011±0.15 1.828±1.00 4.116±0.26 0.044±0.00 1.887±0.66 9.398±9.46 2.994±0.42
ENSMUSG00000027304 ENSMUST00000028767 4.361±1.46 4.508±3.16 7.856±0.23 14.479±1.40 4.513±1.49 4.111±1.68 4.224±0.65 4.662±1.24 4.746±2.50 4.322±0.95 6.834±0.18 6.573±3.09 21.855±15.17 5.892±0.48
ENSMUST00000126984 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136321 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149904 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000064722 ENSMUST00000082788 N/A N/A N/A 52.458±0.00 N/A N/A N/A N/A 8.617±0.00 N/A N/A N/A N/A N/A

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