C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000028767 Rtf1-001 ENSMUSG00000027304 10090 + 2:119675068-119735407 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028767
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028767 4.361±1.46 4.508±3.16 7.856±0.23 14.479±1.40 4.513±1.49 4.111±1.68 4.224±0.65 4.662±1.24 4.746±2.50 4.322±0.95 6.834±0.18 6.573±3.09 21.855±15.17 5.892±0.48

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005FB CIL_0005FB_0002 CGP 2:119655446-119735407
CIL_0005FC CIL_0005FC_0002 CGP 2:119675068-119751263

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IMP negative regulation of transcription from RNA polymerase II promoter
GO:0001711 IMP endodermal cell fate commitment
GO:0003697 ISS single-stranded DNA binding
GO:0005515 IEA protein binding
GO:0005730 IDA nucleolus
GO:0006352 IEA DNA-templated transcription, initiation
GO:0016055 IEA Wnt signaling pathway
GO:0016593 ISS Cdc73/Paf1 complex
GO:0019827 IMP stem cell maintenance
GO:0032968 ISS positive regulation of transcription elongation from RNA polymerase II promoter
GO:0044822 IEA poly(A) RNA binding
GO:0045944 ISS positive regulation of transcription from RNA polymerase II promoter
GO:0051571 IMP positive regulation of histone H3-K4 methylation
GO:0080182 IMP histone H3-K4 trimethylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000389629 RTF1-001 protein_coding Homo_sapiens 0 3456
ENST00000462276 RTF1-002 processed_transcript Homo_sapiens 0 405
ENST00000473214 RTF1-003 retained_intron Homo_sapiens 0 614
ENST00000558117 RTF1-005 retained_intron Homo_sapiens 0 311
ENST00000558298 RTF1-004 processed_transcript Homo_sapiens 0 219
ENST00000560447 RTF1-007 protein_coding Homo_sapiens 0 682
ENST00000561076 RTF1-006 retained_intron Homo_sapiens 0 339

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