C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005MS_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000026629-ENSDARG00000055412 CGP 7955 20:26738616-26895718
GeneTranscriptPositionBiotype
ENSDARG00000026629 (gmds)
GDP-mannose 4,6-dehydratase 		ENSDART00000046764 (gmds-001) 26738616-26852157 protein_coding
ENSDART00000103234 (gmds-201) 26739061-26852108 protein_coding
ENSDART00000143267 (gmds-002) 26836916-26852157 protein_coding
ENSDART00000146326 (gmds-003) 26805419-26852129 protein_coding
ENSDARG00000055412 (mylk4b)
myosin light chain kinase family, member 4b 		ENSDART00000077767 (mylk4b-002) 26856872-26895718 protein_coding
ENSDART00000088875 (mylk4b-201) 26858477-26895240 protein_coding
ENSDART00000136687 (mylk4b-001) 26856872-26875635 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0005MS_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000038372-ENSMUSG00000044951 CGP 10090 13:31819579-32783954
GeneTranscriptPositionBiotype
ENSMUSG00000038372 (Gmds)
GDP-mannose 4, 6-dehydratase 		ENSMUST00000041859 (Gmds-001) 31819579-32338712 protein_coding
ENSMUST00000178294 (Gmds-002) 32099227-32338585 retained_intron
ENSMUST00000178313 (Gmds-003) 32157330-32227241 processed_transcript
ENSMUST00000179717 (Gmds-004) 32225232-32338624 nonsense_mediated_decay
ENSMUSG00000044951 (Mylk4)
myosin light chain kinase family, member 4 		ENSMUST00000057428 (Mylk4-201) 32700827-32781779 protein_coding
ENSMUST00000132206 (Mylk4-002) 32766514-32783954 processed_transcript
ENSMUST00000134352 (Mylk4-001) 32704680-32781716 protein_coding
ENSMUSG00000083149 (Gm11380)
predicted gene 11380 		ENSMUST00000118067 (Gm11380-001) 31884225-31885224 processed_pseudogene
ENSMUSG00000085770 (Gm11381)
predicted gene 11381 		ENSMUST00000138574 (Gm11381-001) 32379907-32383688 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005MS_0001ENSDARG00000026629ENSDART00000046764ENSDART00000103234ENSDART00000143267ENSDART00000146326ENSDARG00000055412ENSDART00000077767ENSDART00000088875ENSDART00000136687CIL_0005MS_0002ENSMUSG00000038372ENSMUST00000041859ENSMUST00000178294ENSMUST00000178313ENSMUST00000179717ENSMUSG00000044951ENSMUST00000057428ENSMUST00000132206ENSMUST00000134352ENSMUSG00000083149ENSMUST00000118067ENSMUSG00000085770ENSMUST00000138574
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005MS_0001ENSDARG00000026629ENSDART00000046764ENSDART00000103234ENSDART00000143267ENSDART00000146326ENSDARG00000055412ENSDART00000077767ENSDART00000088875ENSDART00000136687CIL_0005MS_0002ENSMUSG00000038372ENSMUST00000041859ENSMUST00000179717ENSMUSG00000044951ENSMUST00000057428ENSMUST00000132206ENSMUST00000134352ENSMUSG00000083149ENSMUST00000118067ENSMUSG00000085770ENSMUST00000138574
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000026629 ENSDART00000046764 N/A N/A N/A 4.829±4.67 N/A N/A 5.158±4.12 9.294±6.58 0.763±0.00 N/A 4.059±0.00 N/A N/A N/A
ENSDART00000103234 N/A N/A N/A N/A N/A N/A 1.278±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000143267 N/A N/A N/A 0.106±0.00 N/A N/A 0.172±0.10 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000146326 N/A N/A N/A 0.239±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000055412 ENSDART00000077767 N/A N/A N/A 0.622±0.23 N/A N/A 1.065±0.00 0.197±0.00 N/A N/A 5.062±0.00 N/A N/A N/A
ENSDART00000088875 N/A N/A N/A 0.340±0.00 N/A N/A 28.194±0.00 0.748±0.00 0.076±0.00 N/A N/A N/A N/A N/A
ENSDART00000136687 N/A N/A N/A 0.208±0.00 N/A N/A 17.398±13.93 0.720±0.10 N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000038372 ENSMUST00000041859 6.058±1.04 3.972±1.70 7.155±1.91 7.832±2.02 4.347±1.31 99.671±11.43 1.733±0.17 6.910±0.84 3.080±2.02 5.901±1.49 0.658±0.13 8.549±2.96 11.190±2.98 2.645±0.59
ENSMUST00000178294 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000178313 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000179717 6.978±1.65 N/A N/A N/A 6.019±1.76 171.169±16.95 N/A 7.073±1.16 1.556±0.13 4.238±1.24 N/A 10.543±2.62 N/A N/A
ENSMUSG00000044951 ENSMUST00000057428 0.025±0.01 0.026±0.02 0.028±0.01 0.041±0.01 0.026±0.01 0.024±0.01 5.380±1.32 0.082±0.04 0.033±0.03 0.474±0.19 149.045±131.78 0.431±0.33 0.016±0.01 0.179±0.12
ENSMUST00000132206 0.068±0.01 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000134352 N/A N/A N/A N/A N/A N/A N/A 0.068±0.00 N/A N/A N/A 0.077±0.00 0.024±0.00 N/A
ENSMUSG00000083149 ENSMUST00000118067 0.624±0.22 0.411±0.09 0.822±0.45 1.064±0.05 1.107±0.26 1.344±0.34 0.282±0.09 0.257±0.03 1.058±0.75 1.033±0.27 0.140±0.05 0.842±0.52 4.718±5.35 2.781±0.73
ENSMUSG00000085770 ENSMUST00000138574 N/A N/A N/A N/A N/A 0.282±0.00 N/A N/A N/A N/A N/A 0.338±0.16 N/A N/A

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