C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 11380
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000118067 Gm11380-001 ENSMUSG00000083149 10090 + 13:31884225-31885224 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000118067
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000118067 0.624±0.22 0.411±0.09 0.822±0.45 1.064±0.05 1.107±0.26 1.344±0.34 0.282±0.09 0.257±0.03 1.058±0.75 1.033±0.27 0.140±0.05 0.842±0.52 4.718±5.35 2.781±0.73

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005SP CIL_0005SP_0003 CGP 13:31806691-32338712
CIL_0005MS CIL_0005MS_0002 CGP 13:31819579-32783954
CIL_0007NQ CIL_0007NQ_0002 UCNEbase 13:31859907-32034200

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000391360 RP11-347C18.1-001 processed_pseudogene Homo_sapiens 0 364
ENST00000394133 RP11-624L12.1-001 processed_pseudogene Homo_sapiens 0 370
ENST00000396131 RPL17P50-001 processed_pseudogene Homo_sapiens 5.00264e-43 178
ENST00000404330 RPL17P25-001 processed_pseudogene Homo_sapiens 6e-38 161
ENST00000429934 RP11-383F6.1-001 processed_pseudogene Homo_sapiens 1.4013e-45 187
ENST00000442115 RP11-11M20.2-001 processed_pseudogene Homo_sapiens 7e-22 108
ENST00000444020 RP11-1029M24.1-001 processed_pseudogene Homo_sapiens 0 337
ENST00000445757 AC007677.2-001 processed_pseudogene Homo_sapiens 1e-33 147
ENST00000446498 RP3-476K8.4-001 processed_pseudogene Homo_sapiens 0 387
ENST00000448403 RP11-383G10.3-001 processed_pseudogene Homo_sapiens 0 370
ENST00000456309 RP11-317B3.2-001 processed_pseudogene Homo_sapiens 0 217
ENST00000461464 RPL17P20-001 processed_pseudogene Homo_sapiens 0 364
ENST00000467688 RPL17P22-001 processed_pseudogene Homo_sapiens 0 390
ENST00000483964 RP11-7F18.1-001 processed_pseudogene Homo_sapiens 0 296
ENST00000485656 RP11-273P3.1-001 processed_pseudogene Homo_sapiens 4e-24 115
ENST00000488371 RP11-864J10.2-001 processed_pseudogene Homo_sapiens 0 195
ENST00000488887 AF131215.1-001 processed_pseudogene Homo_sapiens 0 189
ENST00000498256 RPL17P33-001 processed_pseudogene Homo_sapiens 0 363
ENST00000511559 RP11-115A14.1-001 processed_pseudogene Homo_sapiens 0 202
ENST00000560214 RP11-14C10.2-001 processed_pseudogene Homo_sapiens 1e-35 154
ENST00000596405 CTD-2550O8.7-001 processed_pseudogene Homo_sapiens 2.00386e-43 180
ENST00000605218 RPL17P51-001 processed_pseudogene Homo_sapiens 4e-21 104

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