C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: beta-transducin repeat containing protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000065601 Btrc-201 ENSMUSG00000025217 10090 + 19:45363734-45533341 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000065601
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000065601 3.171±1.40 4.693±1.03 4.679±0.71 8.618±1.57 3.465±0.59 3.151±0.77 1.996±0.74 4.131±1.08 2.690±0.72 5.068±0.63 1.811±0.75 4.258±1.38 1.807±0.87 3.339±1.31

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000940 CIL_000940_0002 VISTA 19:44925545-45526320
CIL_0007ZR CIL_0007ZR_0002 VISTA 19:45042853-45643685
CIL_00089J CIL_00089J_0002 VISTA 19:45175437-45776961
CIL_000942 CIL_000942_0002 VISTA 19:45193585-45794869
CIL_0007PC CIL_0007PC_0002 UCNEbase 19:45225898-45494518
CIL_0005NA CIL_0005NA_0002 CGP 19:45232684-45533341

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000209 IDA protein polyubiquitination
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005829 TAS cytosol
GO:0006470 IDA protein dephosphorylation
GO:0006511 ISS ubiquitin-dependent protein catabolic process
GO:0008013 IDA beta-catenin binding
GO:0016055 IEA Wnt signaling pathway
GO:0016567 IEA protein ubiquitination
GO:0019005 ISS SCF ubiquitin ligase complex
GO:0030163 IMP protein catabolic process
GO:0031146 IBA SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
GO:0031648 ISS protein destabilization
GO:0033598 IMP mammary gland epithelial cell proliferation
GO:0042752 ISS regulation of circadian rhythm
GO:0042753 IMP positive regulation of circadian rhythm
GO:0043122 IMP regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043161 ISS proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0045309 IDA protein phosphorylated amino acid binding
GO:0045862 ISS positive regulation of proteolysis
GO:0045892 ISS negative regulation of transcription, DNA-templated
GO:0045893 IMP positive regulation of transcription, DNA-templated
GO:0046983 IEA protein dimerization activity
GO:0048511 IEA rhythmic process
GO:0051726 IMP regulation of cell cycle
GO:0060444 IMP branching involved in mammary gland duct morphogenesis
GO:0061136 IDA regulation of proteasomal protein catabolic process
GO:0071407 IDA cellular response to organic cyclic compound

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000370183 BTRC-005 protein_coding Homo_sapiens 0 859
ENST00000370187 BTRC-001 protein_coding Homo_sapiens 0 2974
ENST00000393441 BTRC-201 protein_coding Homo_sapiens 0 2425
ENST00000408038 BTRC-002 protein_coding Homo_sapiens 0 2566
ENST00000465182 BTRC-006 processed_transcript Homo_sapiens 0 787
ENST00000475200 BTRC-004 processed_transcript Homo_sapiens 0 708
ENST00000493877 BTRC-003 processed_transcript Homo_sapiens 0 597

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