C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005VT_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000165672-ENSG00000198873 CGP 9606 10:119167703-119459742
GeneTranscriptPositionBiotype
ENSG00000165672 (PRDX3)
peroxiredoxin 3 		ENST00000298510 (PRDX3-001) 119167703-119178833 protein_coding
ENST00000463322 (PRDX3-002) 119173745-119174772 processed_transcript
ENST00000494433 (PRDX3-003) 119168069-119170988 processed_transcript
ENSG00000198873 (GRK5)
G protein-coupled receptor kinase 5 		ENST00000369108 (GRK5-003) 119452448-119459742 retained_intron
ENST00000392870 (GRK5-002) 119207589-119455619 protein_coding
ENSG00000228485 (GRK5-IT1)
GRK5 intronic transcript 1 (non-protein coding) 		ENST00000421206 (GRK5-IT1-001) 119208531-119211760 sense_intronic
ENSG00000236426 (RP11-79M19.2)
 ENST00000457948 (RP11-79M19.2-001) 119334494-119336182 antisense
ENSG00000242853 (RN7SL749P)
RNA, 7SL, cytoplasmic 749, pseudogene 		ENST00000460421 (RN7SL749P-201) 119212857-119213146 misc_RNA

Homo sapiens Ensembl (GRCh38)

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CIL_0005VT_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000024997-ENSMUSG00000003228 CGP 10090 19:60864051-61092553
GeneTranscriptPositionBiotype
ENSMUSG00000003228 (Grk5)
G protein-coupled receptor kinase 5 		ENSMUST00000003313 (Grk5-201) 60889749-61092553 protein_coding
ENSMUSG00000024997 (Prdx3)
peroxiredoxin 3 		ENSMUST00000025961 (Prdx3-001) 60864051-60874556 protein_coding
ENSMUSG00000088894 (Gm22520)
predicted gene, 22520 		ENSMUST00000158269 (Gm22520-201) 61013417-61013545 snoRNA
ENSMUSG00000096578 (Gm9529)
predicted gene 9529 		ENSMUST00000177598 (Gm9529-201) 60966672-60967254 pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005VT_0001ENSG00000165672ENST00000298510ENST00000463322ENST00000494433ENSG00000198873ENST00000369108ENST00000392870ENSG00000228485ENST00000421206ENSG00000236426ENST00000457948ENSG00000242853ENST00000460421CIL_0005VT_0002ENSMUSG00000003228ENSMUST00000003313ENSMUSG00000024997ENSMUST00000025961ENSMUSG00000088894ENSMUST00000158269ENSMUSG00000096578ENSMUST00000177598
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005VT_0001ENSG00000165672ENST00000298510ENST00000494433ENSG00000198873ENST00000369108ENST00000392870ENSG00000228485ENST00000421206ENSG00000236426ENST00000457948ENSG00000242853ENST00000460421CIL_0005VT_0002ENSMUSG00000003228ENSMUST00000003313ENSMUSG00000024997ENSMUST00000025961ENSMUSG00000088894ENSMUST00000158269ENSMUSG00000096578ENSMUST00000177598
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000165672 ENST00000298510 28.713±0.00 44.742±0.00 25.580±0.00 33.383±5.55 40.102±22.59 33.350±10.84 54.473±36.49 85.191±14.30 43.163±28.97 22.875±7.30 41.507±3.76 35.597±19.20 35.946±15.47 22.789±14.24
ENST00000463322 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494433 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.747±0.00 N/A 1.691±0.00
ENSG00000198873 ENST00000369108 N/A N/A N/A N/A N/A N/A N/A N/A 0.180±0.00 N/A 0.264±0.00 1.490±0.00 N/A N/A
ENST00000392870 10.963±0.00 13.819±0.00 0.351±0.00 2.142±1.23 7.784±3.62 14.892±13.35 6.426±4.64 2.749±1.72 2.961±0.70 34.948±32.76 2.626±1.94 16.069±9.38 10.387±1.23 5.833±3.15
ENSG00000228485 ENST00000421206 0.030±0.00 0.485±0.00 N/A 0.098±0.07 0.266±0.09 N/A 0.169±0.00 N/A N/A 0.183±0.00 N/A 0.456±0.00 0.121±0.00 0.109±0.00
ENSG00000236426 ENST00000457948 0.187±0.00 0.042±0.00 N/A N/A 0.512±0.49 0.533±0.00 0.056±0.04 0.085±0.00 N/A 0.479±0.00 N/A 0.131±0.06 0.128±0.00 0.450±0.05
ENSG00000242853 ENST00000460421 0.191±0.00 0.068±0.00 N/A N/A 0.143±0.00 0.282±0.04 0.331±0.01 N/A 0.337±0.00 0.216±0.06 N/A 0.770±0.47 0.277±0.00 0.062±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000003228 ENSMUST00000003313 3.760±1.88 1.393±0.64 3.766±0.33 1.632±0.84 2.388±1.07 1.377±0.66 1.186±0.26 1.283±0.71 0.647±0.26 3.687±1.77 1.010±0.30 2.040±1.40 1.639±0.95 0.769±0.34
ENSMUSG00000024997 ENSMUST00000025961 121.122±15.04 532.567±194.04 68.640±12.25 18.730±8.40 155.202±9.79 84.964±8.48 216.715±11.13 191.158±10.33 146.163±43.33 49.838±1.35 102.288±6.36 105.053±27.48 39.731±27.95 15.157±7.17
ENSMUSG00000088894 ENSMUST00000158269 1151.420±0.00 N/A N/A N/A N/A N/A N/A N/A 6.394±0.00 N/A N/A N/A N/A N/A
ENSMUSG00000096578 ENSMUST00000177598 0.147±0.05 N/A 0.034±0.00 0.039±0.02 N/A 0.369±0.00 N/A N/A 0.075±0.03 0.331±0.11 N/A 0.067±0.00 0.036±0.02 N/A

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