C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006BW_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000057728-ENSDARG00000057741 CGP 7955 18:15295243-15346018
GeneTranscriptPositionBiotype
ENSDARG00000057728 (slc17a8)
solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 8 		ENSDART00000080454 (slc17a8-001) 15295243-15314483 protein_coding
ENSDARG00000057741 (nr1h4)
nuclear receptor subfamily 1, group H, member 4 		ENSDART00000061794 (nr1h4-001) 15323635-15346018 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0006BW_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000179520-ENSG00000012504 CGP 9606 12:100357079-100564413
GeneTranscriptPositionBiotype
ENSG00000012504 (NR1H4)
nuclear receptor subfamily 1, group H, member 4 		ENST00000188403 (NR1H4-005) 100503360-100563642 protein_coding
ENST00000321046 (NR1H4-004) 100473916-100563511 nonsense_mediated_decay
ENST00000392986 (NR1H4-003) 100473916-100563503 protein_coding
ENST00000546380 (NR1H4-008) 100473955-100505766 protein_coding
ENST00000548621 (NR1H4-009) 100493301-100505796 nonsense_mediated_decay
ENST00000548884 (NR1H4-001) 100473708-100564413 protein_coding
ENST00000549996 (NR1H4-002) 100473916-100563511 protein_coding
ENST00000551184 (NR1H4-007) 100503453-100505824 protein_coding
ENST00000551379 (NR1H4-006) 100503360-100563489 protein_coding
ENSG00000179520 (SLC17A8)
solute carrier family 17 (vesicular glutamate transporter), member 8 		ENST00000323346 (SLC17A8-001) 100357079-100422059 protein_coding
ENST00000392989 (SLC17A8-002) 100357368-100420252 protein_coding
ENST00000547922 (SLC17A8-004) 100402618-100404380 retained_intron
ENST00000552697 (SLC17A8-003) 100410621-100420089 processed_transcript
ENSG00000271177 (RP11-575G13.3)
 ENST00000605098 (RP11-575G13.3-001) 100525186-100525420 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006BW_0001ENSDARG00000057728ENSDART00000080454ENSDARG00000057741ENSDART00000061794CIL_0006BW_0002ENSG00000012504ENST00000188403ENST00000321046ENST00000392986ENST00000546380ENST00000548621ENST00000548884ENST00000549996ENST00000551184ENST00000551379ENSG00000179520ENST00000323346ENST00000392989ENST00000547922ENST00000552697ENSG00000271177ENST00000605098
Region; Gene Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006BW_0001ENSDARG00000057728ENSDART00000080454ENSDARG00000057741ENSDART00000061794CIL_0006BW_0002ENSG00000012504ENST00000188403ENST00000321046ENST00000392986ENST00000546380ENST00000548884ENST00000549996ENST00000551184ENST00000551379ENSG00000179520ENST00000323346ENST00000392989ENST00000547922ENST00000552697ENSG00000271177ENST00000605098
Gene Transcript Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000057728 ENSDART00000080454 N/A N/A 0.463±0.26 N/A N/A N/A 0.072±0.00 N/A N/A 0.078±0.00 N/A N/A N/A
ENSDARG00000057741 ENSDART00000061794 N/A N/A N/A N/A N/A 0.148±0.00 2.673±0.71 2.570±0.00 N/A 0.173±0.00 N/A N/A N/A
Gene Transcript Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000012504 ENST00000188403 0.096±0.00 1.839±0.00 0.159±0.00 0.213±0.00 1.920±0.00 N/A 4.994±0.00 3.861±3.60 N/A N/A 1.281±0.24 N/A 0.158±0.00
ENST00000321046 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.344±0.30 N/A N/A
ENST00000392986 N/A N/A N/A N/A N/A N/A 4.017±0.00 3.970±0.00 N/A N/A 1.509±0.48 N/A N/A
ENST00000546380 N/A N/A N/A N/A N/A N/A N/A N/A 0.652±0.00 N/A 0.042±0.00 N/A N/A
ENST00000548621 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000548884 N/A 0.376±0.00 N/A N/A N/A N/A 7.642±0.00 1.306±1.26 N/A N/A 1.345±0.24 N/A 0.071±0.00
ENST00000549996 N/A N/A 0.043±0.00 N/A N/A N/A N/A N/A 0.019±0.00 N/A N/A N/A N/A
ENST00000551184 N/A N/A N/A N/A N/A N/A N/A N/A 2.483±0.00 N/A N/A N/A N/A
ENST00000551379 N/A 1.646±0.00 N/A N/A 0.428±0.37 0.025±0.00 7.384±2.73 N/A 0.049±0.00 N/A N/A N/A 0.117±0.01
ENSG00000179520 ENST00000323346 0.003±0.00 0.012±0.00 0.247±0.06 N/A N/A 0.005±0.00 N/A N/A N/A N/A 0.040±0.00 0.130±0.09 0.060±0.00
ENST00000392989 N/A N/A 0.511±0.00 N/A 0.030±0.00 N/A 0.143±0.00 0.042±0.00 N/A N/A 0.018±0.00 N/A 0.063±0.00
ENST00000547922 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.066±0.00 N/A
ENST00000552697 N/A N/A N/A N/A N/A N/A N/A 0.080±0.00 N/A N/A N/A N/A 0.111±0.00
ENSG00000271177 ENST00000605098 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.734±0.00 N/A N/A

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