C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006C4_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000005842-ENSDARG00000077231 CGP 7955 18:6208514-6314031
GeneTranscriptPositionBiotype
ENSDARG00000005842 (cd9a)
CD9 antigen (p24) a 		ENSDART00000019571 (cd9a-001) 6208514-6223090 protein_coding
ENSDART00000135587 (cd9a-002) 6208514-6229857 protein_coding
ENSDART00000143548 (cd9a-003) 6211834-6223114 retained_intron
ENSDARG00000077231 (vwf)
von Willebrand factor 		ENSDART00000114690 (vwf-201) 6236081-6314031 protein_coding
ENSDART00000134872 (vwf-001) 6237720-6285014 protein_coding
ENSDART00000142484 (vwf-004) 6296157-6302892 processed_transcript
ENSDART00000142905 (vwf-002) 6290315-6307535 protein_coding
ENSDART00000143345 (vwf-003) 6273178-6282150 processed_transcript

Danio rerio Ensembl (Zv9)

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CIL_0006C4_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000030342-ENSMUSG00000001930 CGP 10090 6:125460266-125686679
GeneTranscriptPositionBiotype
ENSMUSG00000001930 (Vwf)
Von Willebrand factor homolog 		ENSMUST00000001995 (Vwf-201) 125552963-125686677 protein_coding
ENSMUST00000100941 (Vwf-004) 125546774-125592174 protein_coding
ENSMUST00000112253 (Vwf-002) 125552963-125592471 protein_coding
ENSMUST00000112254 (Vwf-001) 125552948-125686679 protein_coding
ENSMUST00000126709 (Vwf-005) 125566251-125578578 processed_transcript
ENSMUST00000129436 (Vwf-010) 125654931-125656627 retained_intron
ENSMUST00000134073 (Vwf-007) 125603550-125642924 processed_transcript
ENSMUST00000139678 (Vwf-009) 125634348-125636662 retained_intron
ENSMUST00000141521 (Vwf-008) 125646339-125661967 retained_intron
ENSMUST00000146264 (Vwf-006) 125685737-125686635 processed_transcript
ENSMUST00000147101 (Vwf-011) 125649269-125686672 nonsense_mediated_decay
ENSMUST00000150548 (Vwf-003) 125552963-125604776 retained_intron
ENSMUSG00000030342 (Cd9)
CD9 antigen 		ENSMUST00000032492 (Cd9-001) 125460266-125494791 protein_coding
ENSMUST00000130132 (Cd9-002) 125460589-125478302 processed_transcript
ENSMUST00000140024 (Cd9-003) 125462116-125463024 retained_intron
ENSMUSG00000101191 (RP23-389F23.2)
predicted gene 28809 		ENSMUST00000187542 (RP23-389F23.2-001) 125481363-125484678 antisense
ENSMUST00000187724 (RP23-389F23.2-002) 125481944-125483567 antisense

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006C4_0001ENSDARG00000005842ENSDART00000019571ENSDART00000135587ENSDART00000143548ENSDARG00000077231ENSDART00000114690ENSDART00000134872ENSDART00000142484ENSDART00000142905ENSDART00000143345CIL_0006C4_0002ENSMUSG00000001930ENSMUST00000001995ENSMUST00000100941ENSMUST00000112253ENSMUST00000112254ENSMUST00000126709ENSMUST00000129436ENSMUST00000134073ENSMUST00000139678ENSMUST00000141521ENSMUST00000146264ENSMUST00000147101ENSMUST00000150548ENSMUSG00000030342ENSMUST00000032492ENSMUST00000130132ENSMUST00000140024ENSMUSG00000101191ENSMUST00000187542ENSMUST00000187724
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006C4_0001ENSDARG00000005842ENSDART00000019571ENSDART00000135587ENSDARG00000077231ENSDART00000114690ENSDART00000142905CIL_0006C4_0002ENSMUSG00000001930ENSMUST00000001995ENSMUST00000112254ENSMUST00000139678ENSMUST00000146264ENSMUST00000147101ENSMUSG00000030342ENSMUST00000032492ENSMUST00000140024ENSMUSG00000101191ENSMUST00000187542ENSMUST00000187724
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000005842 ENSDART00000019571 N/A N/A N/A 4.120±0.00 N/A N/A 23.921±6.83 13.822±6.81 3.480±0.00 N/A 1.577±0.00 N/A N/A N/A
ENSDART00000135587 N/A N/A N/A 36.391±23.66 N/A N/A 23.394±16.32 11.775±5.48 13.536±0.00 N/A 2.139±0.00 N/A N/A N/A
ENSDART00000143548 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000077231 ENSDART00000114690 N/A N/A N/A 0.282±0.31 N/A N/A 33.032±16.19 9.281±0.00 N/A N/A N/A N/A N/A N/A
ENSDART00000134872 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000142484 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000142905 N/A N/A N/A 1.373±0.00 N/A N/A 108.312±0.00 N/A N/A N/A 1.359±0.00 N/A N/A N/A
ENSDART00000143345 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000001930 ENSMUST00000001995 6.437±1.95 0.872±0.48 3.693±1.59 0.636±0.34 6.166±2.01 2.960±0.16 4.697±1.52 0.735±0.31 0.589±0.19 33.671±1.21 2.407±0.19 3.944±1.37 1.725±1.44 1.037±0.36
ENSMUST00000100941 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000112253 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000112254 4.931±0.00 0.574±0.20 N/A 0.461±0.00 3.707±0.00 N/A 4.198±1.55 0.837±0.42 0.816±0.34 15.274±1.86 N/A 3.363±1.67 0.627±0.20 1.358±0.19
ENSMUST00000126709 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000129436 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000134073 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139678 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.735±1.00 N/A N/A
ENSMUST00000141521 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146264 N/A 11.976±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 28.882±0.77 N/A N/A
ENSMUST00000147101 9.883±5.91 0.922±0.14 8.316±1.52 1.553±0.65 5.449±0.99 3.188±0.53 5.636±1.12 1.095±0.39 1.954±0.94 26.796±2.61 2.532±0.69 4.224±1.22 2.359±0.94 1.709±0.32
ENSMUST00000150548 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000030342 ENSMUST00000032492 97.111±36.88 64.831±5.08 405.934±78.30 16.851±6.16 144.013±17.80 308.144±27.25 45.607±8.74 83.199±5.78 67.012±71.51 359.108±11.12 14.245±1.77 117.309±35.26 238.647±74.00 5.605±2.74
ENSMUST00000130132 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140024 N/A N/A N/A 5.157±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.242±0.00
ENSMUSG00000101191 ENSMUST00000187542 0.413±0.07 0.362±0.13 0.381±0.00 0.139±0.09 0.837±0.39 0.476±0.19 0.300±0.05 0.559±0.18 0.149±0.05 1.425±0.35 0.086±0.01 0.707±0.30 0.300±0.07 0.335±0.12
ENSMUST00000187724 N/A 0.446±0.00 N/A N/A 0.239±0.00 0.335±0.04 N/A 0.281±0.04 0.282±0.12 N/A 0.175±0.00 1.522±1.23 0.120±0.00 0.739±0.00

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