C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006FU_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000087842-ENSDARG00000060085 CGP 7955 2:43081596-43184873
GeneTranscriptPositionBiotype
ENSDARG00000060085 (kcnq3)
potassium voltage-gated channel, KQT-like subfamily, member 3 		ENSDART00000084303 (kcnq3-201) 43115527-43184867 protein_coding
ENSDART00000136141 (kcnq3-002) 43102630-43111514 protein_coding
ENSDART00000145494 (kcnq3-001) 43118413-43184873 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0006FU_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000132297-ENSG00000184156 CGP 9606 8:132061486-132480953
GeneTranscriptPositionBiotype
ENSG00000132297 (HHLA1)
HERV-H LTR-associating 1 		ENST00000414222 (HHLA1-201) 132061486-132105265 protein_coding
ENST00000434736 (HHLA1-001) 132069675-132111159 protein_coding
ENST00000473291 (HHLA1-002) 132063785-132081104 retained_intron
ENSG00000184156 (KCNQ3)
potassium voltage-gated channel, KQT-like subfamily, member 3 		ENST00000388996 (KCNQ3-001) 132120861-132480953 protein_coding
ENST00000519445 (KCNQ3-002) 132129090-132480578 protein_coding
ENST00000519589 (KCNQ3-003) 132129145-132480310 retained_intron
ENST00000521134 (KCNQ3-004) 132128981-132447262 protein_coding
ENST00000621976 (KCNQ3-201) 132120859-132187213 protein_coding

Homo sapiens Ensembl (GRCh38)

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CIL_0006FU_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000072511-ENSMUSG00000056258 CGP 10090 15:65922443-66286224
GeneTranscriptPositionBiotype
ENSMUSG00000056258 (Kcnq3)
potassium voltage-gated channel, subfamily Q, member 3 		ENSMUST00000070256 (Kcnq3-001) 65986387-66286224 protein_coding
ENSMUST00000183354 (Kcnq3-003) 66025116-66103254 processed_transcript
ENSMUST00000183633 (Kcnq3-002) 66283073-66286051 retained_intron
ENSMUSG00000072511 (Hhla1)
HERV-H LTR-associating 1 		ENSMUST00000100584 (Hhla1-001) 65922443-65976804 protein_coding
ENSMUSG00000092454 (Gm2991)
predicted pseudogene 2991 		ENSMUST00000173338 (Gm2991-001) 65928454-65928933 processed_pseudogene
ENSMUSG00000099013 (Gm27153)
predicted gene 27153 		ENSMUST00000184492 (Gm27153-001) 66074552-66091807 antisense

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006FU_0001ENSDARG00000060085ENSDART00000084303ENSDART00000136141ENSDART00000145494CIL_0006FU_0002ENSG00000132297ENST00000414222ENST00000434736ENST00000473291ENSG00000184156ENST00000388996ENST00000519445ENST00000519589ENST00000521134ENST00000621976CIL_0006FU_0003ENSMUSG00000056258ENSMUST00000070256ENSMUST00000183354ENSMUST00000183633ENSMUSG00000072511ENSMUST00000100584ENSMUSG00000092454ENSMUST00000173338ENSMUSG00000099013ENSMUST00000184492
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006FU_0001ENSDARG00000060085ENSDART00000084303ENSDART00000136141ENSDART00000145494CIL_0006FU_0002ENSG00000132297ENST00000414222ENST00000473291ENSG00000184156ENST00000388996ENST00000519445ENST00000521134ENST00000621976CIL_0006FU_0003ENSMUSG00000056258ENSMUST00000070256ENSMUST00000183354ENSMUST00000183633ENSMUSG00000072511ENSMUST00000100584ENSMUSG00000092454ENSMUST00000173338ENSMUSG00000099013ENSMUST00000184492
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000060085 ENSDART00000084303 N/A N/A N/A 0.599±0.46 N/A N/A 0.032±0.01 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000136141 N/A N/A N/A 0.504±0.42 N/A N/A 0.066±0.03 N/A N/A N/A 0.048±0.00 N/A N/A N/A
ENSDART00000145494 N/A N/A N/A 2.520±1.55 N/A N/A N/A 0.054±0.00 N/A N/A 0.169±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000132297 ENST00000414222 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.056±0.00 N/A
ENST00000434736 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473291 0.644±0.00 2.129±0.00 0.051±0.00 3.223±3.20 0.716±0.65 0.359±0.15 0.496±0.00 0.935±0.91 0.719±0.34 0.308±0.22 0.232±0.00 1.156±1.36 0.815±0.75 2.613±1.60
ENSG00000184156 ENST00000388996 0.063±0.00 N/A N/A 3.770±0.69 N/A N/A 0.069±0.00 0.115±0.00 0.013±0.00 0.362±0.00 N/A N/A N/A 0.044±0.00
ENST00000519445 N/A N/A N/A N/A N/A N/A N/A N/A 0.112±0.00 N/A N/A N/A 0.068±0.00 0.030±0.00
ENST00000519589 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521134 N/A N/A 0.092±0.00 N/A N/A N/A 0.014±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000621976 0.181±0.00 N/A 0.074±0.00 2.942±0.00 N/A 0.052±0.00 0.032±0.02 0.025±0.00 0.027±0.02 N/A N/A 0.060±0.02 0.024±0.01 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000056258 ENSMUST00000070256 0.034±0.00 0.258±0.09 0.031±0.00 3.775±0.19 0.017±0.01 0.145±0.01 0.020±0.00 0.074±0.02 0.006±0.00 0.009±0.01 0.012±0.00 0.143±0.06 0.021±0.01 0.338±0.17
ENSMUST00000183354 N/A N/A N/A N/A 0.166±0.01 N/A N/A N/A N/A 0.057±0.00 N/A 0.333±0.00 N/A N/A
ENSMUST00000183633 N/A N/A 0.018±0.00 N/A N/A 0.092±0.00 N/A N/A 0.009±0.00 N/A N/A 0.086±0.00 0.017±0.00 0.424±0.23
ENSMUSG00000072511 ENSMUST00000100584 N/A N/A N/A 0.011±0.00 N/A N/A N/A 0.023±0.01 N/A N/A N/A 0.106±0.05 0.011±0.00 0.050±0.00
ENSMUSG00000092454 ENSMUST00000173338 0.075±0.00 0.238±0.09 0.024±0.00 0.011±0.00 0.067±0.00 0.139±0.00 0.073±0.01 0.069±0.00 0.111±0.09 0.082±0.01 N/A N/A 0.092±0.00 0.192±0.12
ENSMUSG00000099013 ENSMUST00000184492 N/A N/A N/A N/A N/A N/A N/A N/A 0.105±0.04 N/A N/A N/A N/A 0.148±0.00

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