C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006GB_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000135338-ENSG00000198478 CGP 9606 6:79484991-79703659
GeneTranscriptPositionBiotype
ENSG00000135338 (LCA5)
Leber congenital amaurosis 5 		ENST00000369846 (LCA5-001) 79484991-79537408 protein_coding
ENST00000392959 (LCA5-002) 79484991-79537430 protein_coding
ENST00000467898 (LCA5-003) 79487828-79537458 protein_coding
ENSG00000198478 (SH3BGRL2)
SH3 domain binding glutamate-rich protein like 2 		ENST00000369838 (SH3BGRL2-001) 79631283-79703659 protein_coding
ENSG00000261970 (RP11-342L8.2)
 ENST00000571144 (RP11-342L8.2-001) 79552794-79553160 processed_pseudogene
ENSG00000272137 (RP11-177G23.2)
 ENST00000607718 (RP11-177G23.2-001) 79561132-79561602 lincRNA
ENSG00000279659 (RP11-177G23.1)
 ENST00000623514 (RP11-177G23.1-001) 79573877-79575530 TEC

Homo sapiens Ensembl (GRCh38)

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CIL_0006GB_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000032258-ENSMUSG00000032261 CGP 10090 9:83390293-83638801
GeneTranscriptPositionBiotype
ENSMUSG00000032258 (Lca5)
Leber congenital amaurosis 5 (human) 		ENSMUST00000034791 (Lca5-001) 83393419-83441027 protein_coding
ENSMUST00000034793 (Lca5-002) 83391364-83441127 protein_coding
ENSMUST00000186802 (Lca5-007) 83423223-83434723 protein_coding
ENSMUST00000188548 (Lca5-005) 83426749-83441116 protein_coding
ENSMUST00000188907 (Lca5-006) 83426840-83441062 processed_transcript
ENSMUST00000190373 (Lca5-003) 83422247-83441093 retained_intron
ENSMUST00000190514 (Lca5-004) 83390293-83426961 nonsense_mediated_decay
ENSMUST00000190557 (Lca5-009) 83423428-83426969 retained_intron
ENSMUST00000191225 (Lca5-008) 83400635-83401869 retained_intron
ENSMUSG00000032261 (Sh3bgrl2)
SH3 domain binding glutamic acid-rich protein like 2 		ENSMUST00000113215 (Sh3bgrl2-001) 83548328-83601346 protein_coding
ENSMUST00000185664 (Sh3bgrl2-004) 83576831-83597524 protein_coding
ENSMUST00000188030 (Sh3bgrl2-003) 83548350-83638299 protein_coding
ENSMUST00000188241 (Sh3bgrl2-002) 83548327-83638801 protein_coding
ENSMUST00000188617 (Sh3bgrl2-005) 83548329-83549011 retained_intron
ENSMUSG00000058838 (Rps27a-ps2)
ribosomal protein S27A, pseudogene 2 		ENSMUST00000078766 (Rps27a-ps2-001) 83409660-83410126 processed_pseudogene
ENSMUSG00000099718 (RP23-72A20.9)
predicted gene 2087 		ENSMUST00000188217 (RP23-72A20.9-001) 83431547-83454573 antisense
ENSMUSG00000099816 (RP23-72A20.8)
predicted gene 28552 		ENSMUST00000190725 (RP23-72A20.8-001) 83480032-83480419 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006GB_0001ENSG00000135338ENST00000369846ENST00000392959ENST00000467898ENSG00000198478ENST00000369838ENSG00000261970ENST00000571144ENSG00000272137ENST00000607718ENSG00000279659ENST00000623514CIL_0006GB_0002ENSMUSG00000032258ENSMUST00000034791ENSMUST00000034793ENSMUST00000186802ENSMUST00000188548ENSMUST00000188907ENSMUST00000190373ENSMUST00000190514ENSMUST00000190557ENSMUST00000191225ENSMUSG00000032261ENSMUST00000113215ENSMUST00000185664ENSMUST00000188030ENSMUST00000188241ENSMUST00000188617ENSMUSG00000058838ENSMUST00000078766ENSMUSG00000099718ENSMUST00000188217ENSMUSG00000099816ENSMUST00000190725
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006GB_0001ENSG00000135338ENST00000369846ENST00000392959ENSG00000198478ENST00000369838ENSG00000261970ENST00000571144ENSG00000272137ENST00000607718ENSG00000279659ENST00000623514CIL_0006GB_0002ENSMUSG00000032258ENSMUST00000034791ENSMUST00000034793ENSMUST00000186802ENSMUST00000188907ENSMUSG00000032261ENSMUST00000113215ENSMUST00000185664ENSMUSG00000058838ENSMUST00000078766ENSMUSG00000099718ENSMUST00000188217ENSMUSG00000099816ENSMUST00000190725
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000135338 ENST00000369846 1.361±0.00 0.852±0.00 0.302±0.00 1.820±0.60 1.000±0.10 1.713±0.00 0.466±0.00 1.362±0.00 1.168±1.03 1.678±0.95 0.254±0.00 1.630±0.63 0.611±0.17 4.232±0.43
ENST00000392959 N/A N/A N/A N/A 0.224±0.01 0.623±0.00 0.075±0.00 N/A 0.294±0.00 0.521±0.00 0.220±0.00 0.585±0.10 0.199±0.00 0.501±0.00
ENST00000467898 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000198478 ENST00000369838 42.743±0.00 6.338±0.00 3.585±0.00 10.973±0.33 11.011±0.43 13.502±2.55 2.257±0.89 9.810±1.13 7.652±1.81 6.408±1.42 1.670±1.04 5.190±3.09 5.677±2.34 2.663±2.32
ENSG00000261970 ENST00000571144 0.029±0.00 0.114±0.00 N/A 1.297±1.13 0.107±0.00 0.400±0.37 0.417±0.31 0.162±0.00 N/A N/A N/A 0.244±0.00 N/A 0.189±0.16
ENSG00000272137 ENST00000607718 N/A 0.139±0.00 0.911±0.00 0.558±0.36 2.122±0.00 0.148±0.00 0.227±0.08 0.015±0.00 0.785±0.00 0.572±0.56 0.189±0.00 0.366±0.28 0.152±0.07 0.763±0.49
ENSG00000279659 ENST00000623514 N/A 0.011±0.00 0.714±0.00 0.072±0.00 0.131±0.05 0.128±0.08 0.280±0.15 0.052±0.00 0.411±0.41 0.033±0.01 0.451±0.00 0.380±0.40 0.022±0.00 0.147±0.09
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000032258 ENSMUST00000034791 0.441±0.03 0.328±0.07 1.465±0.22 3.840±1.21 0.302±0.11 0.255±0.17 N/A 0.195±0.10 0.169±0.13 1.049±0.04 0.259±0.00 1.138±0.49 0.909±0.06 0.903±0.12
ENSMUST00000034793 N/A N/A N/A N/A 0.205±0.07 N/A N/A N/A 0.030±0.00 N/A N/A 1.614±0.00 N/A N/A
ENSMUST00000186802 N/A N/A N/A N/A N/A N/A N/A N/A 0.104±0.03 N/A N/A N/A N/A N/A
ENSMUST00000188548 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000188907 N/A 0.528±0.24 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000190373 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000190514 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000190557 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000191225 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000032261 ENSMUST00000113215 3.305±1.68 2.518±0.15 20.735±4.20 2.701±0.52 1.989±0.29 24.509±3.46 1.048±0.08 7.039±0.27 5.783±2.08 5.184±0.48 0.151±0.05 2.513±1.08 11.490±5.58 2.451±1.03
ENSMUST00000185664 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 12.146±1.70 1.940±0.00
ENSMUST00000188030 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000188241 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000188617 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000058838 ENSMUST00000078766 1.366±0.29 N/A 3.064±1.99 1.859±0.00 0.982±0.90 0.587±0.30 0.585±0.32 0.435±0.19 3.830±4.00 0.146±0.00 0.501±0.18 0.672±0.53 0.729±0.59 0.196±0.07
ENSMUSG00000099718 ENSMUST00000188217 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.065±0.35
ENSMUSG00000099816 ENSMUST00000190725 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.244±0.00 N/A N/A N/A N/A

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