C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Leber congenital amaurosis 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000369846 LCA5-001 ENSG00000135338 9606 - 6:79484991-79537408 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000369846
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000369846 1.361±0.00 0.852±0.00 0.302±0.00 1.820±0.60 1.000±0.10 1.713±0.00 0.466±0.00 1.362±0.00 1.168±1.03 1.678±0.95 0.254±0.00 1.630±0.63 0.611±0.17 4.232±0.43

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000626 CIL_000626_0002 CGP 6:79201245-79537458
CIL_0006GB CIL_0006GB_0001 CGP 6:79484991-79703659

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0005929 IDA cilium
GO:0015031 IEA protein transport
GO:0032403 IDA protein complex binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000034791 Lca5-001 protein_coding Mus_musculus 0 1243

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