C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Leber congenital amaurosis 5 (human)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000034791 Lca5-001 ENSMUSG00000032258 10090 - 9:83393419-83441027 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000034791
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000034791 0.441±0.03 0.328±0.07 1.465±0.22 3.840±1.21 0.302±0.11 0.255±0.17 0.195±0.10 0.169±0.13 1.049±0.04 0.259±0.00 1.138±0.49 0.909±0.06 0.903±0.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000626 CIL_000626_0003 CGP 9:83109948-83441127
CIL_0006GB CIL_0006GB_0002 CGP 9:83390293-83638801

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005929 IDA cilium
GO:0032403 IEA protein complex binding
GO:0042073 IMP intraciliary transport
GO:0045494 IMP photoreceptor cell maintenance

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000369846 LCA5-001 protein_coding Homo_sapiens 0 1243
ENST00000392959 LCA5-002 protein_coding Homo_sapiens 0 1243

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