C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S27A, pseudogene 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000078766 Rps27a-ps2-001 ENSMUSG00000058838 10090 + 9:83409660-83410126 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000078766
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000078766 1.366±0.29 3.064±1.99 1.859±0.00 0.982±0.90 0.587±0.30 0.585±0.32 0.435±0.19 3.830±4.00 0.146±0.00 0.501±0.18 0.672±0.53 0.729±0.59 0.196±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000626 CIL_000626_0003 CGP 9:83109948-83441127
CIL_0006GB CIL_0006GB_0002 CGP 9:83390293-83638801

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000272317 RPS27A-001 protein_coding Homo_sapiens 0 664
ENST00000329806 RP11-558O12.1-001 processed_pseudogene Homo_sapiens 0 460
ENST00000402285 RPS27A-003 protein_coding Homo_sapiens 0 664
ENST00000402798 RP11-367G18.2-001 processed_pseudogene Homo_sapiens 0 560
ENST00000404735 RPS27A-002 protein_coding Homo_sapiens 0 664
ENST00000422792 AC079807.3-001 processed_pseudogene Homo_sapiens 0 407
ENST00000429552 RP4-814D15.2-001 processed_pseudogene Homo_sapiens 0 536
ENST00000434254 AC008072.1-001 processed_pseudogene Homo_sapiens 1e-35 154
ENST00000443181 MIR4426-001 processed_pseudogene Homo_sapiens 0 623
ENST00000447672 RP11-28P17.3-001 processed_pseudogene Homo_sapiens 0 414
ENST00000449323 RPS27A-004 protein_coding Homo_sapiens 0 466
ENST00000452665 RP11-423E7.1-001 processed_pseudogene Homo_sapiens 0 267
ENST00000453803 RPS27AP3-001 processed_pseudogene Homo_sapiens 0 497
ENST00000457576 RPS27AP2-001 processed_pseudogene Homo_sapiens 0 571
ENST00000468810 RPS27A-010 retained_intron Homo_sapiens 0 228
ENST00000471772 RPS27A-009 retained_intron Homo_sapiens 9e-36 154
ENST00000475545 RPS27AP1-001 processed_pseudogene Homo_sapiens 0 536
ENST00000477681 CTD-2015H6.2-001 processed_pseudogene Homo_sapiens 0 429
ENST00000478196 RPS27A-008 retained_intron Homo_sapiens 0 477
ENST00000492222 RP11-51O6.1-001 transcribed_processed_pseudogene Homo_sapiens 0 667
ENST00000494756 RPS27A-012 retained_intron Homo_sapiens 9e-36 154
ENST00000495843 RPS27A-005 retained_intron Homo_sapiens 0 285
ENST00000498403 RP11-1070A24.1-001 processed_pseudogene Homo_sapiens 0 241
ENST00000515536 RP11-166J22.1-001 processed_pseudogene Homo_sapiens 0 387
ENST00000591758 RP11-51O6.1-002 processed_transcript Homo_sapiens 0 667
ENST00000597285 CTD-3214H19.12-001 processed_pseudogene Homo_sapiens 0 394
ENST00000611893 RPS27A-201 protein_coding Homo_sapiens 0 285

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