C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Leber congenital amaurosis 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000392959 LCA5-002 ENSG00000135338 9606 - 6:79484991-79537430 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000392959
Transcript ID Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000392959 0.224±0.01 0.623±0.00 0.075±0.00 0.294±0.00 0.521±0.00 0.220±0.00 0.585±0.10 0.199±0.00 0.501±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000626 CIL_000626_0002 CGP 6:79201245-79537458
CIL_0006GB CIL_0006GB_0001 CGP 6:79484991-79703659

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0005929 IDA cilium
GO:0015031 IEA protein transport
GO:0032403 IDA protein complex binding
GO:0042073 IEA intraciliary transport
GO:0045494 IEA photoreceptor cell maintenance

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000034791 Lca5-001 protein_coding Mus_musculus 0 1243

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