C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: leucine rich repeat containing 18
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000041673 Lrrc18 10090 + 14:32991382-33015292 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000038956 Lrrc18-001 32991382-33015292 protein_coding
  ENSMUST00000120588 Lrrc18-005 32991403-33008678 protein_coding
  ENSMUST00000120866 Lrrc18-002 32991398-33009396 protein_coding
  ENSMUST00000120951 Lrrc18-006 32991458-33014155 protein_coding
  ENSMUST00000123822 Lrrc18-004 32991446-33008839 protein_coding
  ENSMUST00000123910 Lrrc18-003 32995265-33008459 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000038956ENSMUST00000120866ENSMUST00000120951ENSMUST00000123822
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000038956 0.069±0.00 0.051±0.00 0.040±0.00 0.052±0.00 0.149±0.05 0.102±0.04 0.040±0.01 0.089±0.03 0.023±0.01 N/A 0.021±0.01 0.465±0.26 0.093±0.06 14.461±0.00
ENSMUST00000120866 0.678±0.40 0.199±0.05 N/A 0.041±0.00 0.204±0.13 0.198±0.04 0.173±0.07 0.237±0.18 0.053±0.03 0.568±0.26 0.045±0.00 2.118±0.67 0.291±0.10 296.301±72.13
ENSMUST00000120951 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.020±0.00 N/A 0.171±0.00 N/A
ENSMUST00000123822 N/A N/A N/A N/A 0.137±0.01 0.230±0.00 N/A 0.203±0.00 0.064±0.04 N/A 0.072±0.00 N/A 0.252±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008ZL CIL_0008ZL_0002 VISTA 14:32470674-33071522
CIL_0007OS CIL_0007OS_0003 UCNEbase 14:32546905-33068248
CIL_0006H6 CIL_0006H6_0002 CGP 14:32856756-33185508
CIL_0002J0 CIL_0002J0_0003 CGP 14:32959547-33185508
CIL_0006H4 CIL_0006H4_0002 CGP 14:32991382-33369934

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0005737 IEA cytoplasm
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000076236 lrrc18b leucine rich repeat containing 18b protein_coding Danio_rerio
ENSDARG00000078790 lrrc18a leucine rich repeat containing 18a protein_coding Danio_rerio
ENSG00000165383 LRRC18 leucine rich repeat containing 18 protein_coding Homo_sapiens

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