C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000465940 RP11-58H15.1-001 ENSG00000243175 9606 + 4:143425052-143425920 transcribed_processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainLungOvaryPlacentaENST00000465940
Transcript ID Brain Lung Ovary Placenta
ENST00000465940 0.486±0.00 0.355±0.00 0.099±0.03 0.135±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006MQ CIL_0006MQ_0002 CGP 4:143184917-143474568

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000057740 Rpsa-ps10-201 protein_coding Mus_musculus 0 830
ENSMUST00000035105 Rpsa-201 protein_coding Mus_musculus 0 813
ENSMUST00000120702 Rpsa-ps9-001 processed_pseudogene Mus_musculus 0 802
ENSMUST00000121691 Rpsa-ps4-001 processed_pseudogene Mus_musculus 0 785
ENSMUST00000191040 Rpsa-ps1-001 processed_pseudogene Mus_musculus 0 737
ENSMUST00000120596 Rpsa-ps12-001 processed_pseudogene Mus_musculus 0 734
ENSMUST00000120191 Gm11824-001 processed_pseudogene Mus_musculus 0 734
ENSMUST00000118446 Rpsa-ps11-001 processed_pseudogene Mus_musculus 0 704
ENSMUST00000120423 Gm9083-001 processed_pseudogene Mus_musculus 0 702
ENSMUST00000186198 RP23-2I19.1-001 processed_pseudogene Mus_musculus 0 507
ENSMUST00000059546 Rpsa-ps2-201 processed_pseudogene Mus_musculus 0 479
ENSDART00000135945 rpsa-001 protein_coding Danio_rerio 0 438
ENSMUST00000162286 Gm16228-001 processed_pseudogene Mus_musculus 0 237

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