C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006RZ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000035322-ENSDARG00000020647 CGP 7955 23:18893433-18948646
GeneTranscriptPositionBiotype
ENSDARG00000020647 (trpc4apb)
transient receptor potential cation channel, subfamily C, member 4 associated protein b 		ENSDART00000006482 (trpc4apb-201) 18931123-18948646 protein_coding
ENSDARG00000035322 (myh7bb)
myosin, heavy chain 7B, cardiac muscle, beta b 		ENSDART00000025057 (myh7bb-201) 18916430-18925172 protein_coding
ENSDART00000137438 (myh7bb-001) 18893433-18927796 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0006RZ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000078814-ENSG00000100991 CGP 9606 20:34975403-35092871
GeneTranscriptPositionBiotype
ENSG00000100991 (TRPC4AP)
transient receptor potential cation channel, subfamily C, member 4 associated protein 		ENST00000252015 (TRPC4AP-001) 35002404-35092871 protein_coding
ENST00000451813 (TRPC4AP-002) 35002404-35092807 protein_coding
ENSG00000202150 (RNU6-407P)
RNA, U6 small nuclear 407, pseudogene 		ENST00000365280 (RNU6-407P-201) 35030317-35030420 snRNA
ENSG00000207635 (MIR499A)
microRNA 499a 		ENST00000384903 (MIR499A-201) 34990376-34990497 miRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0006RZ_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000074652-ENSMUSG00000038324 CGP 10090 2:155611212-155692384
GeneTranscriptPositionBiotype
ENSMUSG00000038324 (Trpc4ap)
transient receptor potential cation channel, subfamily C, member 4 associated protein 		ENSMUST00000041059 (Trpc4ap-001) 155634271-155692384 protein_coding
ENSMUST00000103140 (Trpc4ap-002) 155634308-155692332 protein_coding
ENSMUST00000130755 (Trpc4ap-004) 155653104-155692382 retained_intron
ENSMUST00000136764 (Trpc4ap-006) 155673057-155692123 processed_transcript
ENSMUST00000140370 (Trpc4ap-005) 155643594-155663822 retained_intron
ENSMUST00000143115 (Trpc4ap-009) 155635596-155637782 retained_intron
ENSMUST00000146484 (Trpc4ap-008) 155638983-155640540 retained_intron
ENSMUST00000147913 (Trpc4ap-007) 155665882-155668478 retained_intron
ENSMUST00000152548 (Trpc4ap-003) 155638976-155673051 retained_intron
ENSMUST00000153246 (Trpc4ap-010) 155634745-155637736 processed_transcript
ENSMUSG00000074652 (Myh7b)
myosin, heavy chain 7B, cardiac muscle, beta 		ENSMUST00000092995 (Myh7b-001) 155611212-155634307 protein_coding
ENSMUST00000124415 (Myh7b-002) 155629060-155630384 processed_transcript
ENSMUST00000154656 (Myh7b-003) 155633451-155634203 retained_intron
ENSMUSG00000088695 (Gm22334)
predicted gene, 22334 		ENSMUST00000158070 (Gm22334-201) 155652892-155653024 snoRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006RZ_0001ENSDARG00000020647ENSDART00000006482ENSDARG00000035322ENSDART00000025057ENSDART00000137438CIL_0006RZ_0002ENSG00000100991ENST00000252015ENST00000451813ENSG00000202150ENST00000365280ENSG00000207635ENST00000384903CIL_0006RZ_0003ENSMUSG00000038324ENSMUST00000041059ENSMUST00000103140ENSMUST00000130755ENSMUST00000136764ENSMUST00000140370ENSMUST00000143115ENSMUST00000146484ENSMUST00000147913ENSMUST00000152548ENSMUST00000153246ENSMUSG00000074652ENSMUST00000092995ENSMUST00000124415ENSMUST00000154656ENSMUSG00000088695ENSMUST00000158070
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006RZ_0001ENSDARG00000020647ENSDART00000006482ENSDARG00000035322ENSDART00000025057ENSDART00000137438CIL_0006RZ_0002ENSG00000100991ENST00000252015ENST00000451813ENSG00000202150ENST00000365280ENSG00000207635ENST00000384903CIL_0006RZ_0003ENSMUSG00000038324ENSMUST00000041059ENSMUST00000103140ENSMUST00000130755ENSMUSG00000074652ENSMUST00000092995ENSMUSG00000088695ENSMUST00000158070
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000020647 ENSDART00000006482 N/A N/A N/A 5.091±2.76 N/A N/A 3.975±3.25 1.482±1.21 1.125±0.00 N/A 5.849±0.00 N/A N/A N/A
ENSDARG00000035322 ENSDART00000025057 N/A N/A N/A 0.045±0.02 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000137438 N/A N/A N/A 0.029±0.01 N/A N/A 4.694±1.56 0.218±0.19 N/A N/A 0.101±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000100991 ENST00000252015 9.530±0.00 6.632±0.00 N/A 8.054±1.47 8.733±5.13 4.682±0.04 4.013±2.54 9.628±5.22 7.247±0.00 6.363±0.00 8.796±2.87 12.198±4.63 20.442±0.59 10.925±1.61
ENST00000451813 9.073±0.00 14.015±0.00 1.035±0.00 9.625±5.66 11.139±0.00 6.526±0.00 4.441±3.16 7.514±0.00 7.147±0.00 4.485±0.00 19.717±0.00 5.914±1.92 9.902±6.39 10.292±2.66
ENSG00000202150 ENST00000365280 1.235±0.00 0.212±0.00 N/A N/A N/A 0.590±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000207635 ENST00000384903 N/A 0.918±0.00 N/A N/A 0.370±0.00 N/A N/A N/A N/A N/A N/A 26.332±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000038324 ENSMUST00000041059 52.116±4.33 46.406±8.93 33.646±1.89 40.093±18.68 43.796±13.82 55.448±6.60 30.371±5.04 41.222±3.34 30.298±5.74 48.907±3.92 34.603±5.08 72.722±25.02 41.876±17.33 28.306±13.09
ENSMUST00000103140 7.974±0.00 37.358±8.84 N/A 7.505±0.00 11.101±1.79 10.037±0.00 N/A 7.664±1.04 7.901±2.30 N/A 6.498±0.69 11.858±1.81 19.000±5.68 5.813±0.56
ENSMUST00000130755 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 13.340±0.00 N/A
ENSMUST00000136764 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140370 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143115 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146484 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147913 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152548 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153246 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000074652 ENSMUST00000092995 N/A N/A N/A N/A N/A N/A 9.232±2.04 N/A 3.020±0.31 N/A 3.522±0.00 N/A N/A N/A
ENSMUST00000124415 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154656 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000088695 ENSMUST00000158070 N/A N/A 8.479±0.00 7.448±0.00 N/A N/A 1052.420±0.00 2091.270±0.00 N/A N/A N/A N/A 9.679±0.00 N/A

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