C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transient receptor potential cation channel, subfamily C, member 4 associated protein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000038324 Trpc4ap 10090 - 2:155634271-155692384 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000041059 Trpc4ap-001 155634271-155692384 protein_coding
  ENSMUST00000103140 Trpc4ap-002 155634308-155692332 protein_coding
  ENSMUST00000130755 Trpc4ap-004 155653104-155692382 retained_intron
  ENSMUST00000136764 Trpc4ap-006 155673057-155692123 processed_transcript
  ENSMUST00000140370 Trpc4ap-005 155643594-155663822 retained_intron
  ENSMUST00000143115 Trpc4ap-009 155635596-155637782 retained_intron
  ENSMUST00000146484 Trpc4ap-008 155638983-155640540 retained_intron
  ENSMUST00000147913 Trpc4ap-007 155665882-155668478 retained_intron
  ENSMUST00000152548 Trpc4ap-003 155638976-155673051 retained_intron
  ENSMUST00000153246 Trpc4ap-010 155634745-155637736 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000041059ENSMUST00000103140ENSMUST00000130755
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000041059 52.116±4.33 46.406±8.93 33.646±1.89 40.093±18.68 43.796±13.82 55.448±6.60 30.371±5.04 41.222±3.34 30.298±5.74 48.907±3.92 34.603±5.08 72.722±25.02 41.876±17.33 28.306±13.09
ENSMUST00000103140 7.974±0.00 37.358±8.84 N/A 7.505±0.00 11.101±1.79 10.037±0.00 N/A 7.664±1.04 7.901±2.30 N/A 6.498±0.69 11.858±1.81 19.000±5.68 5.813±0.56
ENSMUST00000130755 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 13.340±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008EI CIL_0008EI_0002 VISTA 2:155562263-156164147
CIL_0005BE CIL_0005BE_0002 CGP 2:155563181-155634307
CIL_0006RZ CIL_0006RZ_0003 CGP 2:155611212-155692384
CIL_0006AB CIL_0006AB_0002 CGP 2:155634271-155729475

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0006511 ISS ubiquitin-dependent protein catabolic process
GO:0016567 ISS protein ubiquitination
GO:0019902 ISS phosphatase binding
GO:0031464 ISS Cul4A-RING E3 ubiquitin ligase complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000018840 trpc4apa transient receptor potential cation channel, subfamily C, member 4 associated protein a protein_coding Danio_rerio
ENSDARG00000020647 trpc4apb transient receptor potential cation channel, subfamily C, member 4 associated protein b protein_coding Danio_rerio
ENSG00000100991 TRPC4AP transient receptor potential cation channel, subfamily C, member 4 associated protein protein_coding Homo_sapiens

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