C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transient receptor potential cation channel, subfamily C, member 4 associated protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000103140 Trpc4ap-002 ENSMUSG00000038324 10090 - 2:155634308-155692332 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000103140
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000103140 7.974±0.00 37.358±8.84 7.505±0.00 11.101±1.79 10.037±0.00 7.664±1.04 7.901±2.30 6.498±0.69 11.858±1.81 19.000±5.68 5.813±0.56

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008EI CIL_0008EI_0002 VISTA 2:155562263-156164147
CIL_0005BE CIL_0005BE_0002 CGP 2:155563181-155634307
CIL_0006RZ CIL_0006RZ_0003 CGP 2:155611212-155692384
CIL_0006AB CIL_0006AB_0002 CGP 2:155634271-155729475

Gene Ontology

GO IDEvidence TypeGO Description
GO:0006511 ISS ubiquitin-dependent protein catabolic process
GO:0016567 ISS protein ubiquitination
GO:0019902 ISS phosphatase binding
GO:0031464 ISS Cul4A-RING E3 ubiquitin ligase complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000019450 trpc4apa-001 protein_coding Danio_rerio 0 815
ENSDART00000006482 trpc4apb-201 protein_coding Danio_rerio 0 544
ENSDART00000128126 trpc4apa-201 protein_coding Danio_rerio 0 416
ENST00000252015 TRPC4AP-001 protein_coding Homo_sapiens 0 3269
ENST00000451813 TRPC4AP-002 protein_coding Homo_sapiens 0 3363

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