C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006TO_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000054282-ENSG00000117020 CGP 9606 1:243256034-243851079
GeneTranscriptPositionBiotype
ENSG00000054282 (SDCCAG8)
serologically defined colon cancer antigen 8 		ENST00000366541 (SDCCAG8-001) 243256056-243500092 protein_coding
ENST00000435549 (SDCCAG8-002) 243286383-243500091 protein_coding
ENST00000463012 (SDCCAG8-008) 243307784-243316895 processed_transcript
ENST00000463042 (SDCCAG8-009) 243418017-243476364 processed_transcript
ENST00000476722 (SDCCAG8-003) 243286354-243306548 protein_coding
ENST00000482234 (SDCCAG8-011) 243271025-243305087 processed_transcript
ENST00000490065 (SDCCAG8-006) 243256034-243286397 processed_transcript
ENST00000491888 (SDCCAG8-005) 243269136-243271032 processed_transcript
ENST00000493334 (SDCCAG8-004) 243338753-243415829 processed_transcript
ENST00000496361 (SDCCAG8-007) 243293118-243305557 processed_transcript
ENST00000497459 (SDCCAG8-010) 243487815-243500089 processed_transcript
ENSG00000117020 (AKT3)
v-akt murine thymoma viral oncogene homolog 3 		ENST00000263826 (AKT3-201) 243499720-243843282 protein_coding
ENST00000336199 (AKT3-002) 243488233-243843236 protein_coding
ENST00000366539 (AKT3-001) 243501763-243850128 protein_coding
ENST00000366540 (AKT3-007) 243499719-243843584 protein_coding
ENST00000463991 (AKT3-003) 243664772-243814682 processed_transcript
ENST00000490018 (AKT3-004) 243695591-243818174 processed_transcript
ENST00000491219 (AKT3-005) 243687437-243695716 processed_transcript
ENST00000492957 (AKT3-006) 243612483-243615146 processed_transcript
ENST00000550388 (AKT3-009) 243735664-243814730 processed_transcript
ENST00000552631 (AKT3-008) 243645905-243851079 protein_coding
ENSG00000224727 (FCF1P7)
FCF1 pseudogene 7 		ENST00000451185 (FCF1P7-001) 243267257-243268119 processed_pseudogene
ENSG00000226766 (FABP7P1)
fatty acid binding protein 7, brain pseudogene 1 		ENST00000424004 (FABP7P1-001) 243624666-243625056 processed_pseudogene
ENSG00000228939 (AKT3-IT1)
AKT3 intronic transcript 1 (non-protein coding) 		ENST00000417120 (AKT3-IT1-001) 243793205-243794400 sense_intronic
ENSG00000265201 (MIR4677)
microRNA 4677 		ENST00000584153 (MIR4677-201) 243346176-243346255 miRNA

Homo sapiens Ensembl (GRCh38)

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Structures from Ensembl
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CIL_0006TO_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000026504-ENSMUSG00000019699 CGP 10090 1:176814660-177258203
GeneTranscriptPositionBiotype
ENSMUSG00000026504 (Sdccag8)
serologically defined colon cancer antigen 8 		ENSMUST00000027785 (Sdccag8-001) 176814660-177020437 protein_coding
ENSMUST00000056773 (Sdccag8-005) 176814660-176862127 protein_coding
ENSMUST00000123409 (Sdccag8-003) 176814660-177020437 nonsense_mediated_decay
ENSMUST00000133305 (Sdccag8-004) 176814660-176956360 retained_intron
ENSMUST00000139589 (Sdccag8-006) 176998009-177020437 processed_transcript
ENSMUST00000150429 (Sdccag8-002) 176814660-176845497 retained_intron
ENSMUSG00000087082 (Gm15423)
predicted gene 15423 		ENSMUST00000150600 (Gm15423-001) 176927999-176932711 antisense

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006TO_0001ENSG00000054282ENST00000366541ENST00000435549ENST00000463012ENST00000463042ENST00000476722ENST00000482234ENST00000490065ENST00000491888ENST00000493334ENST00000496361ENST00000497459ENSG00000117020ENST00000263826ENST00000336199ENST00000366539ENST00000366540ENST00000463991ENST00000490018ENST00000491219ENST00000492957ENST00000550388ENST00000552631ENSG00000224727ENST00000451185ENSG00000226766ENST00000424004ENSG00000228939ENST00000417120ENSG00000265201ENST00000584153CIL_0006TO_0002ENSMUSG00000026504ENSMUST00000027785ENSMUST00000056773ENSMUST00000123409ENSMUST00000133305ENSMUST00000139589ENSMUST00000150429ENSMUSG00000087082ENSMUST00000150600
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006TO_0001ENSG00000054282ENST00000366541ENST00000476722ENST00000490065ENSG00000117020ENST00000263826ENST00000366539ENST00000366540ENSG00000224727ENST00000451185ENSG00000226766ENST00000424004ENSG00000228939ENST00000417120ENSG00000265201ENST00000584153CIL_0006TO_0002ENSMUSG00000026504ENSMUST00000027785ENSMUST00000056773ENSMUST00000133305ENSMUST00000139589ENSMUSG00000087082ENSMUST00000150600
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000054282 ENST00000366541 N/A 3.721±0.00 2.462±0.00 N/A 4.070±0.68 2.497±0.00 1.954±0.32 1.153±0.00 3.512±2.23 7.163±0.00 1.842±0.85 2.699±1.84 3.155±0.76 N/A
ENST00000435549 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000463012 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000463042 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476722 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.558±0.00 N/A N/A N/A
ENST00000482234 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490065 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.365±0.00 N/A N/A N/A
ENST00000491888 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493334 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496361 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497459 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000117020 ENST00000263826 12.115±0.00 3.330±0.00 N/A 8.815±0.00 3.571±1.63 11.783±0.00 1.660±1.08 4.851±0.00 1.081±0.00 6.180±1.08 0.389±0.00 6.020±2.39 4.900±1.69 7.551±0.50
ENST00000336199 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000366539 3.782±0.00 N/A 1.523±0.00 7.025±0.00 2.111±0.00 4.261±2.37 1.059±0.18 1.596±1.24 9.242±0.00 4.264±0.00 0.947±0.00 2.149±0.08 0.909±0.00 4.660±1.83
ENST00000366540 N/A N/A 4.801±0.00 111.801±0.00 10.799±0.00 N/A 3.225±0.00 1.575±0.00 14.113±0.00 11.719±0.00 N/A 10.781±0.00 N/A N/A
ENST00000463991 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490018 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491219 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000492957 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550388 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552631 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000224727 ENST00000451185 N/A 0.486±0.00 0.582±0.00 0.401±0.17 0.176±0.07 N/A 0.114±0.06 0.046±0.00 0.362±0.32 0.556±0.33 N/A N/A N/A 0.108±0.04
ENSG00000226766 ENST00000424004 0.136±0.00 0.315±0.00 2.267±0.00 0.427±0.09 0.137±0.06 1.392±0.00 0.145±0.04 0.232±0.00 1.735±0.00 1.081±0.00 0.125±0.00 0.605±0.52 0.037±0.00 0.606±0.00
ENSG00000228939 ENST00000417120 0.379±0.00 0.999±0.00 2.477±0.00 0.819±0.00 1.780±0.00 0.576±0.18 0.049±0.00 0.193±0.00 0.528±0.00 0.472±0.18 N/A 0.656±0.48 0.076±0.00 0.376±0.30
ENSG00000265201 ENST00000584153 N/A N/A N/A N/A 1.041±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000026504 ENSMUST00000027785 1.949±0.00 1.486±0.17 3.845±0.13 N/A 1.954±0.29 1.064±0.01 1.005±0.15 1.502±0.25 1.136±0.57 N/A 2.437±0.31 2.800±2.08 5.764±5.12 25.333±36.81
ENSMUST00000056773 N/A 2.644±0.00 N/A N/A N/A 1.147±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000123409 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000133305 N/A N/A N/A N/A N/A N/A N/A N/A 0.330±0.12 N/A N/A N/A N/A 2.311±0.44
ENSMUST00000139589 N/A N/A N/A N/A N/A N/A N/A 6.697±0.87 N/A N/A N/A 5.303±0.00 N/A N/A
ENSMUST00000150429 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000087082 ENSMUST00000150600 0.041±0.00 N/A 0.089±0.00 0.134±0.00 N/A N/A N/A 0.056±0.03 0.020±0.01 0.045±0.01 0.070±0.00 0.055±0.02 0.020±0.00 0.065±0.02

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