C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006WU_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000125816-ENSG00000125820 CGP 9606 20:21395367-21514026
GeneTranscriptPositionBiotype
ENSG00000125816 (NKX2-4)
NK2 homeobox 4 		ENST00000351817 (NKX2-4-001) 21395367-21398028 protein_coding
ENSG00000125820 (NKX2-2)
NK2 homeobox 2 		ENST00000377142 (NKX2-2-001) 21511010-21514026 protein_coding
ENSG00000223128 (RN7SKP140)
RNA, 7SK small nuclear pseudogene 140 		ENST00000411196 (RN7SKP140-201) 21424758-21425041 misc_RNA
ENSG00000225280 (RP11-227D2.3)
 ENST00000419666 (RP11-227D2.3-001) 21398893-21400391 antisense
ENST00000552439 (RP11-227D2.3-002) 21397818-21399366 antisense
ENSG00000226405 (RP5-984P4.1)
 ENST00000421090 (RP5-984P4.1-001) 21488244-21488625 processed_pseudogene
ENSG00000227693 (GSTM3P1)
glutathione S-transferase mu 3 pseudogene 1 		ENST00000447621 (GSTM3P1-001) 21501395-21501968 processed_pseudogene
ENSG00000258197 (NKX2-2-AS1)
NKX2-2 antisense RNA 1 		ENST00000549659 (NKX2-2-AS1-001) 21511447-21512309 antisense
ENSG00000278041 (RP5-984P4.6)
 ENST00000622757 (RP5-984P4.6-001) 21499261-21502934 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0006WU_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000054160-ENSMUSG00000027434 CGP 10090 2:147083316-147194243
GeneTranscriptPositionBiotype
ENSMUSG00000027434 (Nkx2-2)
NK2 homeobox 2 		ENSMUST00000067075 (Nkx2-2-002) 147183083-147186404 protein_coding
ENSMUST00000109969 (Nkx2-2-003) 147186305-147194243 processed_transcript
ENSMUST00000109970 (Nkx2-2-001) 147177546-147186101 protein_coding
ENSMUST00000172627 (Nkx2-2-004) 147186382-147194242 processed_transcript
ENSMUSG00000053545 (6430503K07Rik)
RIKEN cDNA 6430503K07 gene 		ENSMUST00000144411 (6430503K07Rik-001) 147187424-147188407 antisense
ENSMUSG00000054160 (Nkx2-4)
NK2 homeobox 4 		ENSMUST00000067020 (Nkx2-4-001) 147083316-147085445 protein_coding
ENSMUSG00000082158 (Gm14116)
predicted gene 14116 		ENSMUST00000117733 (Gm14116-001) 147146408-147147212 processed_pseudogene
ENSMUSG00000086509 (Nkx2-2os)
NK2 homeobox 2, opposite strand 		ENSMUST00000136998 (Nkx2-2os-001) 147184083-147331681 antisense

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006WU_0001ENSG00000125816ENST00000351817ENSG00000125820ENST00000377142ENSG00000223128ENST00000411196ENSG00000225280ENST00000419666ENST00000552439ENSG00000226405ENST00000421090ENSG00000227693ENST00000447621ENSG00000258197ENST00000549659ENSG00000278041ENST00000622757CIL_0006WU_0002ENSMUSG00000027434ENSMUST00000067075ENSMUST00000109969ENSMUST00000109970ENSMUST00000172627ENSMUSG00000053545ENSMUST00000144411ENSMUSG00000054160ENSMUST00000067020ENSMUSG00000082158ENSMUST00000117733ENSMUSG00000086509ENSMUST00000136998
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006WU_0001ENSG00000125816ENST00000351817ENSG00000125820ENST00000377142ENSG00000223128ENST00000411196ENSG00000225280ENST00000419666ENSG00000226405ENST00000421090ENSG00000227693ENST00000447621ENSG00000258197ENST00000549659ENSG00000278041ENST00000622757CIL_0006WU_0002ENSMUSG00000027434ENSMUST00000067075ENSMUST00000109969ENSMUST00000109970ENSMUSG00000053545ENSMUST00000144411ENSMUSG00000054160ENSMUST00000067020ENSMUSG00000082158ENSMUST00000117733ENSMUSG00000086509ENSMUST00000136998
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000125816 ENST00000351817 N/A N/A N/A 0.493±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 1.940±0.87
ENSG00000125820 ENST00000377142 0.045±0.00 0.011±0.00 N/A 1.116±0.64 N/A 0.061±0.00 N/A N/A N/A N/A N/A N/A 0.042±0.00
ENSG00000223128 ENST00000411196 N/A N/A N/A 1.318±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000225280 ENST00000419666 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.253±0.00
ENST00000552439 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000226405 ENST00000421090 N/A N/A N/A 0.104±0.00 N/A N/A 0.039±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000227693 ENST00000447621 N/A N/A N/A 0.494±0.24 N/A N/A 0.258±0.00 N/A N/A N/A N/A N/A 0.441±0.23
ENSG00000258197 ENST00000549659 0.081±0.00 N/A N/A 2.496±1.42 N/A N/A N/A N/A N/A N/A N/A N/A 0.146±0.06
ENSG00000278041 ENST00000622757 0.004±0.00 0.024±0.00 N/A 0.491±0.25 0.066±0.05 0.021±0.00 0.020±0.00 N/A N/A N/A 0.006±0.00 0.024±0.00 0.232±0.07
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027434 ENSMUST00000067075 N/A N/A N/A 1.254±0.57 N/A 0.212±0.09 N/A 0.013±0.01 0.013±0.00 N/A N/A 0.006±0.00 0.014±0.00
ENSMUST00000109969 N/A N/A N/A N/A N/A N/A N/A N/A 0.152±0.00 N/A N/A N/A N/A
ENSMUST00000109970 N/A N/A N/A 1.244±0.47 N/A 0.801±0.26 N/A N/A N/A 0.062±0.00 N/A 0.075±0.03 N/A
ENSMUST00000172627 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000053545 ENSMUST00000144411 N/A N/A N/A 0.315±0.00 N/A 0.218±0.07 N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000054160 ENSMUST00000067020 0.031±0.00 N/A 0.013±0.00 0.728±0.52 0.014±0.00 N/A N/A 0.004±0.00 0.018±0.01 N/A 0.027±0.00 0.030±0.01 0.765±0.61
ENSMUSG00000082158 ENSMUST00000117733 N/A N/A N/A 0.025±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.076±0.00
ENSMUSG00000086509 ENSMUST00000136998 N/A N/A N/A 0.164±0.06 N/A 0.136±0.04 0.011±0.00 0.002±0.00 N/A N/A 0.045±0.00 0.006±0.00 0.010±0.01

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